Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0025g03450.t01 | |
| VIT_07s0104g00090.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0033g00450.t01 | Wine grape | nucleus | 75.53 | 44.94 |
| CDY72660 | Canola | nucleus | 61.7 | 44.27 |
| AT1G66380.1 | Thale cress | nucleus | 63.83 | 43.17 |
| CDY72006 | Canola | nucleus | 60.64 | 32.57 |
| KRH01212 | Soybean | nucleus | 61.7 | 30.69 |
| VIT_02s0033g00400.t01 | Wine grape | nucleus | 71.28 | 29.91 |
| VIT_02s0033g00430.t01 | Wine grape | nucleus | 70.21 | 29.46 |
| VIT_02s0033g00410.t01 | Wine grape | nucleus | 75.53 | 28.4 |
| KRH01217 | Soybean | nucleus | 67.02 | 27.27 |
| KRH40047 | Soybean | nucleus | 67.02 | 26.69 |
| VIT_02s0033g00390.t01 | Wine grape | nucleus | 73.4 | 26.04 |
| VIT_14s0006g01280.t01 | Wine grape | nucleus | 67.02 | 25.93 |
| CDY70737 | Canola | nucleus | 62.77 | 25.88 |
| KRH40053 | Soybean | nucleus | 63.83 | 25.53 |
| VIT_14s0006g01340.t01 | Wine grape | nucleus | 63.83 | 25.1 |
| KRH40049 | Soybean | nucleus | 62.77 | 24.89 |
| VIT_14s0006g01290.t01 | Wine grape | nucleus | 63.83 | 24.69 |
| CDX96151 | Canola | nucleus | 63.83 | 24.29 |
| KRG93566 | Soybean | nucleus | 64.89 | 24.11 |
| Bra001917.1-P | Field mustard | nucleus | 63.83 | 24.1 |
| Solyc10g086270.1.1 | Tomato | nucleus | 65.96 | 23.94 |
| Bra004162.1-P | Field mustard | nucleus | 62.77 | 23.89 |
| CDY49630 | Canola | nucleus | 60.64 | 23.85 |
| Solyc10g086290.1.1 | Tomato | nucleus | 67.02 | 23.77 |
| AT1G66390.1 | Thale cress | nucleus | 62.77 | 23.69 |
| AT1G66370.1 | Thale cress | nucleus | 61.7 | 23.58 |
| AT1G56650.1 | Thale cress | nucleus | 61.7 | 23.39 |
| CDY55040 | Canola | nucleus | 61.7 | 23.29 |
| Bra039763.1-P | Field mustard | nucleus | 61.7 | 23.29 |
| VIT_02s0033g00460.t01 | Wine grape | mitochondrion | 48.94 | 23.12 |
| VIT_01s0011g01200.t01 | Wine grape | nucleus | 51.06 | 23.08 |
| CDY58386 | Canola | nucleus, plastid | 60.64 | 22.89 |
| Solyc10g086260.1.1 | Tomato | nucleus | 65.96 | 22.63 |
| VIT_01s0011g01190.t01 | Wine grape | nucleus | 52.13 | 22.17 |
| Solyc10g086250.1.1 | Tomato | nucleus | 63.83 | 21.82 |
| CDY53214 | Canola | nucleus | 59.57 | 20.22 |
| KRH21221 | Soybean | nucleus | 14.89 | 5.96 |
| PGSC0003DMT400036281 | Potato | extracellular | 12.77 | 5.77 |
| PGSC0003DMT400036284 | Potato | nucleus | 5.32 | 2.36 |
| KRH40048 | Soybean | cytosol | 2.13 | 1.92 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | ProteinID:CCB60325 | ProteinID:CCB60325.1 | UniProt:F6I059 | EMBL:FN596505 |
| GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF952 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000210A7C4 | ArrayExpress:VIT_02s0033g00370 | EnsemblPlantsGene:VIT_02s0033g00370 | EnsemblPlants:VIT_02s0033g00370.t01 | : | : |
Description
No Description!
Coordinates
chr2:-:14163373..14163753
Molecular Weight (calculated)
10737.4 Da
IEP (calculated)
10.472
GRAVY (calculated)
-0.203
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MESLGVIKGA WSQKEDAPLR KCVEKYGEGK RHLVPPIAGL NRCRKSCRLR WVNYLKPNIK RGEFALDEVD LVIRLHNLLG NRQVITSLIT ILVT
001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN
Arabidopsis Description
MYB113Transcription factor MYB113 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.