Factsheet for VIT_02s0033g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_07s0104g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	18532977
AT1G66370.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66370.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66380.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66380.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66390.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g00370.t01	Wine grape	nucleus	28.4	75.53
VIT_02s0033g00450.t01	Wine grape	nucleus	46.4	73.42
CDY72660	Canola	nucleus	34.4	65.65
AT1G66380.1	Thale cress	nucleus	36.0	64.75
VIT_02s0033g00390.t01	Wine grape	nucleus	65.6	61.89
VIT_02s0033g00400.t01	Wine grape	nucleus	54.0	60.27
VIT_02s0033g00430.t01	Wine grape	nucleus	53.2	59.38
CDY72006	Canola	nucleus	37.2	53.14
VIT_02s0033g00460.t01	Wine grape	mitochondrion	41.2	51.76
KRH01212	Soybean	nucleus	38.8	51.32
VIT_14s0006g01290.t01	Wine grape	nucleus	46.0	47.33
VIT_14s0006g01280.t01	Wine grape	nucleus	45.6	46.91
KRH01217	Soybean	nucleus	41.6	45.02
KRH40049	Soybean	nucleus	42.0	44.3
KRH40047	Soybean	nucleus	41.6	44.07
VIT_14s0006g01340.t01	Wine grape	nucleus	42.0	43.93
KRH40053	Soybean	nucleus	41.2	43.83
CDY49630	Canola	nucleus	40.4	42.26
AT1G66390.1	Thale cress	nucleus	41.6	41.77
CDX96151	Canola	nucleus	41.2	41.7
CDY70737	Canola	nucleus	38.0	41.67
Bra001917.1-P	Field mustard	nucleus	41.2	41.37
Bra004162.1-P	Field mustard	nucleus	40.8	41.3
CDY58386	Canola	nucleus, plastid	40.8	40.96
CDY55040	Canola	nucleus	40.8	40.96
Bra039763.1-P	Field mustard	nucleus	40.8	40.96
Solyc10g086270.1.1	Tomato	nucleus	42.4	40.93
AT1G56650.1	Thale cress	nucleus	40.0	40.32
AT1G66370.1	Thale cress	nucleus	39.6	40.24
KRG93566	Soybean	nucleus	40.0	39.53
Solyc10g086250.1.1	Tomato	nucleus	42.8	38.91
Solyc10g086290.1.1	Tomato	nucleus	41.2	38.87
Solyc10g086260.1.1	Tomato	nucleus	40.8	37.23
VIT_01s0011g01190.t01	Wine grape	nucleus	32.4	36.65
CDY53214	Canola	nucleus	40.0	36.1
VIT_01s0011g01200.t01	Wine grape	nucleus	29.6	35.58
PGSC0003DMT400036281	Potato	extracellular	20.0	24.04
PGSC0003DMT400036284	Potato	nucleus	19.6	23.11
KRH40048	Soybean	cytosol	8.4	20.19
KRH21221	Soybean	nucleus	16.8	17.87

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100233098	MapMan:15.5.2.1	EMBL:AB097923	EMBL:AB111100	EMBL:AB111101
EMBL:AB242300	EMBL:AB242301	EMBL:AB242302	EMBL:AB442010	ProteinID:ABB87007	ProteinID:ABB87007.1
ProteinID:ABB87008	ProteinID:ABB87008.1	ProteinID:ABB87009	ProteinID:ABB87009.1	ProteinID:ABB87010	ProteinID:ABB87010.1
ProteinID:ABB87011	ProteinID:ABB87011.1	ProteinID:ABB87012	ProteinID:ABB87012.1	ProteinID:ABB87013	ProteinID:ABB87013.1
ProteinID:ABB87014	ProteinID:ABB87014.1	ProteinID:ABB87018	ProteinID:ABB87018.1	ProteinID:ABD72953	ProteinID:ABD72953.1
ProteinID:ABD72954	ProteinID:ABD72954.1	ProteinID:ABD72955	ProteinID:ABD72955.1	ProteinID:ABD72956	ProteinID:ABD72956.1
ProteinID:ABD72957	ProteinID:ABD72957.1	ProteinID:ABL14063	ProteinID:ABL14063.1	ProteinID:ABL14064	ProteinID:ABL14064.1
ProteinID:ACN53916	ProteinID:ACN53916.1	ProteinID:ACN53922	ProteinID:ACN53922.1	ProteinID:ACN53931	ProteinID:ACN53931.1
ProteinID:ACX35464	ProteinID:ACX35464.1	ProteinID:ACZ54512	ProteinID:ACZ54512.1	ProteinID:ACZ54513	ProteinID:ACZ54513.1
ProteinID:ACZ54514	ProteinID:ACZ54514.1	ProteinID:ACZ54519	ProteinID:ACZ54519.1	ProteinID:ACZ54520	ProteinID:ACZ54520.1
ProteinID:ACZ54521	ProteinID:ACZ54521.1	ProteinID:ACZ54522	ProteinID:ACZ54522.1	ProteinID:ADP07940	ProteinID:ADP07940.1
ProteinID:AFU97146	ProteinID:AFU97146.1	ProteinID:AFU97147	ProteinID:AFU97147.1	EMBL:AM448353	ProteinID:BAD18977
ProteinID:BAD18977.1	ProteinID:BAD18980	ProteinID:BAD18980.1	ProteinID:BAD18987	ProteinID:BAD18987.1	ProteinID:BAE96747
ProteinID:BAE96747.1	ProteinID:BAE96750	ProteinID:BAE96750.1	ProteinID:BAE96751	ProteinID:BAE96751.1	ProteinID:BAH15078
ProteinID:BAH15078.1	ProteinID:CAN61005	ProteinID:CAN61005.1	ProteinID:CBI37397	ProteinID:CBI37397.3	EMBL:DQ277689
EMBL:DQ277690	EMBL:DQ277691	EMBL:DQ277692	EMBL:DQ277693	EMBL:DQ277694	EMBL:DQ277695
EMBL:DQ277696	EMBL:DQ277700	EMBL:DQ345539	EMBL:DQ345540	EMBL:DQ345541	EMBL:DQ403721
EMBL:DQ403722	EMBL:DQ886417	EMBL:DQ886418	EMBL:FJ687552	EMBL:FJ687559	EMBL:FJ687568
EMBL:FN596505	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	EMBL:GQ890360	EMBL:GU145112	EMBL:GU145113
EMBL:GU145114	EMBL:GU145119	EMBL:GU145120	EMBL:GU145121	EMBL:GU145122	EMBL:GU585863
InterPro:Homeobox-like_sf	InterPro:IPR017930	EMBL:JX470201	EMBL:JX470202	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF952	UniProt:Q6L973	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGR:TC52547	UniParc:UPI00003679D7	ArrayExpress:VIT_02s0033g00410	EnsemblPlantsGene:VIT_02s0033g00410	EnsemblPlants:VIT_02s0033g00410.t01
unigene:Vvi.12448	RefSeq:XP_010664911.1	:	:	:	:

Description

Myb-related transcription factor [Source:UniProtKB/TrEMBL;Acc:Q6L973]

Coordinates

chr2:-:14239792..14240808

Molecular Weight (calculated)

28791.2 Da

IEP (calculated)

8.133

GRAVY (calculated)

-0.742

Length

250 amino acids

Sequence
(BLAST)

001: MESLGVRKGA WIQEEDVLLR KCIEKYGEGK WHLVPLRAGL NRCRKSCRLR WLNYLKPDIK RGEFALDEVD LMIRLHNLLG NRWSLIAGRL PGRTANDVKN
101: YWHSHHFKKE VQFQEEGRDK PQTHSKTKAI KPHPHKFSKA LPRFELKTTA VDTFDTQVST SRKPSSTSPQ PNDDIIWWES LLAEHAQMDQ ETDFSASGEM
201: LIASLRTEET ATQKKGPMDG MIEQIQGGEG DFPFDVGFWD TPNTQVNHLI

Best Arabidopsis Sequence Match ( AT1G66370.1 )
(BLAST)

001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN

Arabidopsis Description

MYB113Transcription factor MYB113 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.