Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72660 | Canola | nucleus | 65.71 | 87.79 |
| AT1G66380.1 | Thale cress | nucleus | 68.57 | 86.33 |
| CDY70737 | Canola | nucleus | 88.0 | 67.54 |
| CDY49630 | Canola | nucleus | 88.57 | 64.85 |
| CDX96151 | Canola | nucleus | 85.71 | 60.73 |
| VIT_02s0033g00370.t01 | Wine grape | nucleus | 32.57 | 60.64 |
| VIT_02s0033g00450.t01 | Wine grape | nucleus | 52.57 | 58.23 |
| CDY55040 | Canola | nucleus | 81.71 | 57.43 |
| CDY58386 | Canola | nucleus, plastid | 81.14 | 57.03 |
| AT1G66390.1 | Thale cress | nucleus | 77.71 | 54.62 |
| AT1G56650.1 | Thale cress | nucleus | 76.0 | 53.63 |
| CDY53214 | Canola | nucleus | 78.29 | 49.46 |
| AT1G66370.1 | Thale cress | nucleus | 68.57 | 48.78 |
| KRH01212 | Soybean | nucleus | 47.43 | 43.92 |
| VIT_14s0006g01290.t01 | Wine grape | nucleus | 57.14 | 41.15 |
| VIT_14s0006g01280.t01 | Wine grape | nucleus | 56.57 | 40.74 |
| VIT_02s0033g00400.t01 | Wine grape | nucleus | 51.43 | 40.18 |
| VIT_02s0033g00430.t01 | Wine grape | nucleus | 50.29 | 39.29 |
| KRH40047 | Soybean | nucleus | 52.57 | 38.98 |
| KRH01217 | Soybean | nucleus | 51.43 | 38.96 |
| KRH40053 | Soybean | nucleus | 52.0 | 38.72 |
| VIT_02s0033g00410.t01 | Wine grape | nucleus | 53.14 | 37.2 |
| KRH40049 | Soybean | nucleus | 49.71 | 36.71 |
| VIT_02s0033g00460.t01 | Wine grape | mitochondrion | 41.71 | 36.68 |
| VIT_14s0006g01340.t01 | Wine grape | nucleus | 49.71 | 36.4 |
| Solyc10g086250.1.1 | Tomato | nucleus | 57.14 | 36.36 |
| Solyc10g086270.1.1 | Tomato | nucleus | 53.71 | 36.29 |
| Solyc10g086290.1.1 | Tomato | nucleus | 54.29 | 35.85 |
| VIT_02s0033g00390.t01 | Wine grape | nucleus | 53.71 | 35.47 |
| KRG93566 | Soybean | nucleus | 50.86 | 35.18 |
| Solyc10g086260.1.1 | Tomato | nucleus | 54.86 | 35.04 |
| PGSC0003DMT400036281 | Potato | extracellular | 26.29 | 22.12 |
| PGSC0003DMT400036284 | Potato | nucleus | 23.43 | 19.34 |
| KRH21221 | Soybean | nucleus | 24.57 | 18.3 |
| KRH40048 | Soybean | cytosol | 4.57 | 7.69 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078K2H9 | UniProt:A0A078K2H9 | EnsemblPlants:CDY72006 | ProteinID:CDY72006 |
| ProteinID:CDY72006.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00023098001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF526 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EEB795 | SEG:seg |
Description
BnaCnng75540DBnaCnng75540D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K2H9]
Coordinates
chrLK048520:+:598..2343
Molecular Weight (calculated)
20060.2 Da
IEP (calculated)
10.637
GRAVY (calculated)
-0.806
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSSKRLRK GAWIAEEDNL LRQCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS INRGKFNSDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHEPGCKTQM KKRNLPCSST TPAQKNDVFK PRPRSFTVNN GCSHISGMPE AEFVPLCLGF NDANN
101: KNYWNTHLSK KHEPGCKTQM KKRNLPCSST TPAQKNDVFK PRPRSFTVNN GCSHISGMPE AEFVPLCLGF NDANN
001: MEGSSKGLRK GAWTAEEDSL LRQCIGKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS IKRGKFSSDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHEPCCKTKI KRINIITPPN TPAQKVDIF
101: KNYWNTHLSK KHEPCCKTKI KRINIITPPN TPAQKVDIF
Arabidopsis Description
MYB114Transcription factor MYB114 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.