Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72660 | Canola | nucleus | 46.59 | 88.55 |
| AT1G66380.1 | Thale cress | nucleus | 49.4 | 88.49 |
| AT1G56650.1 | Thale cress | nucleus | 78.71 | 79.03 |
| CDY58386 | Canola | nucleus, plastid | 78.31 | 78.31 |
| Bra001917.1-P | Field mustard | nucleus | 77.91 | 77.91 |
| Bra039763.1-P | Field mustard | nucleus | 77.91 | 77.91 |
| CDY72006 | Canola | nucleus | 54.62 | 77.71 |
| CDY55040 | Canola | nucleus | 77.51 | 77.51 |
| CDX96151 | Canola | nucleus | 73.49 | 74.09 |
| Bra004162.1-P | Field mustard | nucleus | 73.09 | 73.68 |
| CDY70737 | Canola | nucleus | 66.67 | 72.81 |
| CDY49630 | Canola | nucleus | 69.48 | 72.38 |
| AT1G66370.1 | Thale cress | nucleus | 65.46 | 66.26 |
| CDY53214 | Canola | nucleus | 71.08 | 63.9 |
| VIT_02s0033g00370.t01 | Wine grape | nucleus | 23.69 | 62.77 |
| VIT_02s0033g00450.t01 | Wine grape | nucleus | 38.96 | 61.39 |
| KRH01212 | Soybean | nucleus | 38.55 | 50.79 |
| VIT_14s0006g01280.t01 | Wine grape | nucleus | 45.78 | 46.91 |
| VIT_02s0033g00400.t01 | Wine grape | nucleus | 39.76 | 44.2 |
| VIT_14s0006g01290.t01 | Wine grape | nucleus | 42.97 | 44.03 |
| VIT_02s0033g00430.t01 | Wine grape | nucleus | 38.96 | 43.3 |
| KRH01217 | Soybean | nucleus | 39.76 | 42.86 |
| KRH40053 | Soybean | nucleus | 40.16 | 42.55 |
| KRH40047 | Soybean | nucleus | 40.16 | 42.37 |
| KRH40049 | Soybean | nucleus | 39.76 | 41.77 |
| VIT_02s0033g00410.t01 | Wine grape | nucleus | 41.77 | 41.6 |
| Solyc10g086270.1.1 | Tomato | nucleus | 42.57 | 40.93 |
| Solyc10g086260.1.1 | Tomato | nucleus | 44.98 | 40.88 |
| VIT_02s0033g00460.t01 | Wine grape | mitochondrion | 32.53 | 40.7 |
| Solyc10g086250.1.1 | Tomato | nucleus | 44.18 | 40.0 |
| Solyc10g086290.1.1 | Tomato | nucleus | 42.57 | 40.0 |
| VIT_02s0033g00390.t01 | Wine grape | nucleus | 42.57 | 40.0 |
| VIT_14s0006g01340.t01 | Wine grape | nucleus | 38.15 | 39.75 |
| KRG93566 | Soybean | nucleus | 39.36 | 38.74 |
| PGSC0003DMT400036281 | Potato | extracellular | 21.29 | 25.48 |
| PGSC0003DMT400036284 | Potato | nucleus | 20.48 | 24.06 |
| KRH21221 | Soybean | nucleus | 20.48 | 21.7 |
| KRH40048 | Soybean | cytosol | 6.02 | 14.42 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:842957 | ProteinID:AAG52164.1 | ProteinID:AEE34503.1 | EMBL:AF062915 |
| EMBL:AF325124 | ArrayExpress:AT1G66390 | EnsemblPlantsGene:AT1G66390 | RefSeq:AT1G66390 | TAIR:AT1G66390 | RefSeq:AT1G66390-TAIR-G |
| EnsemblPlants:AT1G66390.1 | TAIR:AT1G66390.1 | Symbol:ATMYB90 | Unigene:At.10924 | GO:GO:0000981 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0080167 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_176813.1 | PFAM:PF00249 | PO:PO:0000293 | PO:PO:0004507 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009047 | PO:PO:0025022 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF526 | UniProt:Q9ZTC3 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI00000A00B6 | SEG:seg | : | : | : |
Description
MYB90Transcription factor MYB90 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTC3]
Coordinates
chr1:+:24763941..24765541
Molecular Weight (calculated)
28101.6 Da
IEP (calculated)
8.489
GRAVY (calculated)
-0.610
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSSKGLRK GAWTAEEDSL LRLCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS IKRGRLSNDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHESSCCKSK MKKKNIISPP TTPVQKIGVF KPRPRSFSVN NGCSHLNGLP EVDLIPSCLG LKKNNVCENS ITCNKDDEKD DFVNNLMNGD
201: NMWLENLLGE NQEADAIVPE ATTAEHGATL AFDVEQLWSL FDGETVELD
101: KNYWNTHLSK KHESSCCKSK MKKKNIISPP TTPVQKIGVF KPRPRSFSVN NGCSHLNGLP EVDLIPSCLG LKKNNVCENS ITCNKDDEKD DFVNNLMNGD
201: NMWLENLLGE NQEADAIVPE ATTAEHGATL AFDVEQLWSL FDGETVELD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.