Factsheet for Bra004162.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027653.1-P
Bra027796.1-P
Bra037887.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	Bra027653.1-P	AT1G63650.1	12917293
AT1G56650.1	Bra027796.1-P	AT1G63650.1	12917293
AT1G56650.1	Bra027653.1-P	AT1G63650.1	15361138
AT1G56650.1	Bra027796.1-P	AT1G63650.1	15361138
AT1G56650.1	Bra037887.1-P	AT4G09820.1	15361138
AT1G56650.1	Bra037887.1-P	AT4G09820.1	18532977
AT1G66370.1	Bra027653.1-P	AT1G63650.1	15361138
AT1G66370.1	Bra027796.1-P	AT1G63650.1	15361138
AT1G66370.1	Bra037887.1-P	AT4G09820.1	15361138
AT1G66380.1	Bra027653.1-P	AT1G63650.1	15361138
AT1G66380.1	Bra027796.1-P	AT1G63650.1	15361138
AT1G66380.1	Bra037887.1-P	AT4G09820.1	15361138
AT1G66390.1	Bra027653.1-P	AT1G63650.1	12917293
AT1G66390.1	Bra027796.1-P	AT1G63650.1	12917293
AT1G66390.1	Bra027653.1-P	AT1G63650.1	15361138
AT1G66390.1	Bra027796.1-P	AT1G63650.1	15361138
AT1G66390.1	Bra037887.1-P	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96151	Canola	nucleus	98.38	98.38
AT1G66380.1	Thale cress	nucleus	48.58	86.33
Bra001917.1-P	Field mustard	nucleus	77.33	76.71
Bra039763.1-P	Field mustard	nucleus	76.92	76.31
AT1G66390.1	Thale cress	nucleus	73.68	73.09
AT1G56650.1	Thale cress	nucleus	71.66	71.37
VIT_02s0033g00370.t01	Wine grape	nucleus	23.89	62.77
AT1G66370.1	Thale cress	nucleus	60.73	60.98
VIT_02s0033g00450.t01	Wine grape	nucleus	38.46	60.13
KRH01212	Soybean	nucleus	38.46	50.26
VIT_14s0006g01280.t01	Wine grape	nucleus	46.15	46.91
VIT_14s0006g01290.t01	Wine grape	nucleus	44.94	45.68
VIT_02s0033g00400.t01	Wine grape	nucleus	39.68	43.75
KRH40047	Soybean	nucleus	41.7	43.64
VIT_02s0033g00430.t01	Wine grape	nucleus	39.27	43.3
KRH01217	Soybean	nucleus	40.08	42.86
KRH40053	Soybean	nucleus	39.68	41.7
Solyc10g086260.1.1	Tomato	nucleus	45.75	41.24
KRH40049	Soybean	nucleus	39.27	40.93
VIT_02s0033g00410.t01	Wine grape	nucleus	41.3	40.8
Solyc10g086270.1.1	Tomato	nucleus	42.51	40.54
Solyc10g086250.1.1	Tomato	nucleus	44.94	40.36
VIT_02s0033g00460.t01	Wine grape	mitochondrion	32.39	40.2
VIT_14s0006g01340.t01	Wine grape	nucleus	38.87	40.17
VIT_02s0033g00390.t01	Wine grape	nucleus	42.91	40.0
Solyc10g086290.1.1	Tomato	nucleus	42.51	39.62
KRG93566	Soybean	nucleus	38.06	37.15
PGSC0003DMT400036281	Potato	extracellular	21.86	25.96
PGSC0003DMT400036284	Potato	nucleus	20.65	24.06
KRH21221	Soybean	nucleus	20.24	21.28
KRH40048	Soybean	cytosol	7.29	17.31

Protein Annotations

EnsemblPlants:Bra004162.1	EnsemblPlants:Bra004162.1-P	EnsemblPlantsGene:Bra004162	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF526	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI00025414F6	UniProt:M4CIX8	MapMan:15.5.2.1	:	:	:

Description

AT1G66390 (E=5e-110) ATMYB90, PAP2, MYB90 | MYB90 (MYB DOMAIN PROTEIN 90); DNA binding / transcription factor

Coordinates

chrA07:+:17147044..17152299

Molecular Weight (calculated)

27948.2 Da

IEP (calculated)

8.746

GRAVY (calculated)

-0.760

Length

247 amino acids

Sequence
(BLAST)

001: MEGSSQGLKK GAWTAEEDNL LRQCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS IKRGKLNSDE VDLLMRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHEPGCKTQM KKRNIPCSYT TPAQKIDVFK PRPRSFTVNS GCSHNNGMPE ADIVPLCLGH NDTNNVSENI ITCNKDDDKS ELVSHLMDGQ
201: NRWWESLLDE SQDPAALFPE TTAIKKGATS AFDVEQLWSL LDGETGT

Best Arabidopsis Sequence Match ( AT1G66390.1 )
(BLAST)

001: MEGSSKGLRK GAWTAEEDSL LRLCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS IKRGRLSNDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHESSCCKSK MKKKNIISPP TTPVQKIGVF KPRPRSFSVN NGCSHLNGLP EVDLIPSCLG LKKNNVCENS ITCNKDDEKD DFVNNLMNGD
201: NMWLENLLGE NQEADAIVPE ATTAEHGATL AFDVEQLWSL FDGETVELD

Arabidopsis Description

MYB90Transcription factor MYB90 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.