Factsheet for Bra037887.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001917.1-P
Bra004162.1-P
Bra004473.1-P
Bra004539.1-P
Bra007957.1-P
Bra009770.1-P
Bra010736.1-P
Bra016164.1-P
Bra021389.1-P
Bra027423.1-P
Bra029411.1-P
Bra037887.1-P
Bra039395.1-P
Bra039763.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	Bra001917.1-P	AT1G56650.1	15361138
AT4G09820.1	Bra004162.1-P	AT1G56650.1	15361138
AT4G09820.1	Bra039763.1-P	AT1G56650.1	15361138
AT4G09820.1	Bra001917.1-P	AT1G56650.1	18532977
AT4G09820.1	Bra004162.1-P	AT1G56650.1	18532977
AT4G09820.1	Bra039763.1-P	AT1G56650.1	18532977
AT4G09820.1	Bra001917.1-P	AT1G66370.1	15361138
AT4G09820.1	Bra004162.1-P	AT1G66370.1	15361138
AT4G09820.1	Bra039763.1-P	AT1G66370.1	15361138
AT4G09820.1	Bra001917.1-P	AT1G66380.1	15361138
AT4G09820.1	Bra004162.1-P	AT1G66380.1	15361138
AT4G09820.1	Bra039763.1-P	AT1G66380.1	15361138
AT4G09820.1	Bra001917.1-P	AT1G66390.1	15361138
AT4G09820.1	Bra004162.1-P	AT1G66390.1	15361138
AT4G09820.1	Bra039763.1-P	AT1G66390.1	15361138
AT4G09820.1	Bra007957.1-P	AT1G71030.1	15361138
AT4G09820.1	Bra016164.1-P	AT1G71030.1	15361138
AT4G09820.1	Bra004539.1-P	AT2G46410.1	15361138
AT4G09820.1	Bra004473.1-P	AT2G47190.1	18532977
AT4G09820.1	Bra021389.1-P	AT2G47190.1	18532977
AT4G09820.1	Bra027423.1-P	AT3G13540.1	15361138
AT4G09820.1	Bra039395.1-P	AT3G13540.1	15361138
AT4G09820.1	Bra037887.1-P	AT4G09820.1	18532977
AT4G09820.1	Bra010736.1-P	AT4G38620.1	15361138
AT4G09820.1	Bra009770.1-P	AT5G24520.1	15255866
AT4G09820.1	Bra029411.1-P	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86891	Canola	nucleus	99.8	95.2
CDX99505	Canola	nucleus	97.99	93.47
AT4G09820.1	Thale cress	nucleus	78.07	74.9
KRH71432	Soybean	nucleus	53.32	40.58
KRH32008	Soybean	extracellular, plastid	53.12	39.76
GSMUA_Achr3P17620_001	Banana	nucleus	45.07	39.72
VIT_07s0104g00090.t01	Wine grape	nucleus	54.73	39.08
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	44.87	38.99
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	44.87	37.93
Solyc09g065100.1.1	Tomato	nucleus	48.49	35.44
PGSC0003DMT400033569	Potato	nucleus	41.25	34.75
GSMUA_Achr6P21490_001	Banana	nucleus	45.07	34.41
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	40.44	32.11
TraesCS1B01G112900.1	Wheat	nucleus	38.63	30.43
TraesCS1B01G113100.4	Wheat	nucleus	41.25	29.8
TraesCS1D01G094200.1	Wheat	nucleus	35.81	28.21
OQU88697	Sorghum	nucleus	37.83	27.77
Zm00001d019170_P001	Maize	nucleus	37.63	27.74
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	26.76	26.13
Bra027653.1-P	Field mustard	nucleus	29.38	24.5
Bra027796.1-P	Field mustard	nucleus	28.97	23.76
Bra025508.1-P	Field mustard	nucleus	29.78	23.53
Bra017527.1-P	Field mustard	nucleus	10.66	23.45
Bra024993.1-P	Field mustard	nucleus	16.9	22.28
Bra013263.1-P	Field mustard	nucleus	11.07	20.3
Bra017520.1-P	Field mustard	nucleus	19.92	19.88
Bra000970.1-P	Field mustard	nucleus	25.75	19.57
Bra024992.1-P	Field mustard	nucleus	10.66	19.56
Bra038458.1-P	Field mustard	nucleus	17.71	19.51
Bra013128.1-P	Field mustard	nucleus	10.06	18.73
Bra017523.1-P	Field mustard	nucleus	18.91	18.54
PGSC0003DMT400028054	Potato	cytosol	7.24	18.27
Bra013264.1-P	Field mustard	nucleus	10.87	18.18
Bra012720.1-P	Field mustard	nucleus	16.3	17.76
Bra024998.1-P	Field mustard	nucleus	20.72	17.76
PGSC0003DMT400028052	Potato	nucleus	7.24	17.73
Bra039279.1-P	Field mustard	nucleus	16.3	17.65
Bra010178.1-P	Field mustard	nucleus	20.72	17.17
Bra004532.1-P	Field mustard	nucleus	16.7	17.08
Bra037343.1-P	Field mustard	cytosol	24.35	17.02
Bra039926.1-P	Field mustard	nucleus	9.46	16.21
Bra039927.1-P	Field mustard	nucleus	10.26	16.14
Bra030208.1-P	Field mustard	nucleus	9.86	16.12
Bra030207.1-P	Field mustard	nucleus	10.46	15.95
Bra033273.1-P	Field mustard	nucleus	17.5	14.9
Bra039924.1-P	Field mustard	nucleus	9.26	14.7
Bra010617.1-P	Field mustard	nucleus	9.86	14.67
Bra011790.1-P	Field mustard	nucleus	9.66	14.29
Bra030210.1-P	Field mustard	nucleus	8.85	13.66

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra037887	EnsemblPlants:Bra037887.1	EnsemblPlants:Bra037887.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009791	GO:GO:0009867	GO:GO:0009987	GO:GO:0010026
GO:GO:0010214	GO:GO:0019748	GO:GO:0030154	GO:GO:0031542	GO:GO:0046983	GO:GO:0048316
GO:GO:2000029	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4F9X3	InterPro:MYC/MYB_N
PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00025423B5	InterPro:bHLH_dom	SEG:seg	:	:

Description

AT4G09820 (E=1e-114) TT8 | TT8 (TRANSPARENT TESTA 8); DNA binding / transcription factor

Coordinates

chrA09:+:11294737..11298289

Molecular Weight (calculated)

57536.3 Da

IEP (calculated)

5.610

GRAVY (calculated)

-0.560

Length

497 amino acids

Sequence
(BLAST)

001: MDELSIIPLW KVIGAEKEEI QGLLKAVVQS VGWTYSVFWQ LCPQRRKLMW SSGYYNGAIK TRKTTQPAEV TAEEAASERS QQLMELYETL FAGESSMEAR
101: ACTALSPEDL TDPEWFYVLC FTYSFEPPSG MPGKAYARRK HIWLRGANEV DNKIFSRAIS AKVKESEEFV EHIKSFFHNH PKSNTKPTLS EHFINEEHEE
201: DEEEVEEEEM TMSEEIRLGS PDDDDVSNQN LLSDFHIEAT NSLDTHMDMM NLMEEGGNYS QTVSTLLMSQ PTSLLSDSVS TSSYVQSSFV SWRVENVKEH
301: QQYQRVEKAA WSSSQWMLKH IILKVPFLHD NTKNKRLPRE ELNHVVAERR RREKLNERFI TLRSLVPFVT KMDKVSILGD TIEYVNHLSK RIHELESTHH
401: EPNQKRMRIG KGRTWEEVEV SIIESDVLLE MRCEYRDGLL LNILQVLKEL GIETTAVHTA LNDNHFEAEI RAKVRGKKPT IAEVKIAIHQ IIYNNKL

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.