Factsheet for Bra021389.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027653.1-P
Bra027796.1-P
Bra037887.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47190.1	Bra027653.1-P	AT1G63650.1	12056412
AT2G47190.1	Bra027796.1-P	AT1G63650.1	12056412
AT2G47190.1	Bra037887.1-P	AT4G09820.1	18532977

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27504	Canola	nucleus	98.53	98.53
AT2G47190.1	Thale cress	nucleus	83.46	83.15
Bra004473.1-P	Field mustard	nucleus	83.09	82.18
KRH68299	Soybean	nucleus	42.28	48.52
KRG96561	Soybean	nucleus	41.91	43.85
KRH69178	Soybean	nucleus	41.54	43.46
VIT_07s0005g01950.t01	Wine grape	nucleus	43.01	43.01
Bra039067.1-P	Field mustard	nucleus	36.03	42.24
Bra039108.1-P	Field mustard	nucleus	31.25	41.46
Bra025300.1-P	Field mustard	nucleus	35.29	41.38
KRH31760	Soybean	nucleus	42.65	41.13
Bra001005.1-P	Field mustard	nucleus	31.25	40.87
Bra001202.1-P	Field mustard	nucleus	45.59	40.79
Bra020624.1-P	Field mustard	nucleus	46.69	39.94
Bra010022.1-P	Field mustard	nucleus	46.69	39.32
Bra010021.1-P	Field mustard	nucleus	46.69	39.32
Bra040274.1-P	Field mustard	nucleus	45.59	38.75
Bra029582.1-P	Field mustard	nucleus	45.59	38.51
Bra012482.1-P	Field mustard	nucleus	38.24	36.62
Bra002533.1-P	Field mustard	nucleus	31.25	35.87
Bra004041.1-P	Field mustard	nucleus	37.13	35.82
Bra004297.1-P	Field mustard	nucleus	36.4	34.86
Bra024760.1-P	Field mustard	nucleus	33.82	34.59
Bra033948.1-P	Field mustard	nucleus	36.03	34.39
Bra020289.1-P	Field mustard	nucleus	29.78	34.32
Bra006694.1-P	Field mustard	nucleus	30.15	33.88
Bra018223.1-P	Field mustard	nucleus	30.88	33.33
Bra006977.1-P	Field mustard	nucleus	27.94	31.02
Bra028550.1-P	Field mustard	nucleus	27.21	30.83
Bra015029.1-P	Field mustard	nucleus	30.51	30.63
Bra001941.1-P	Field mustard	nucleus	30.51	30.29
Bra028369.1-P	Field mustard	nucleus	30.15	29.93
Bra020744.1-P	Field mustard	nucleus	26.84	28.4
Bra036202.1-P	Field mustard	nucleus	27.57	28.09
Bra025410.1-P	Field mustard	nucleus	27.57	27.99
HORVU5Hr1G022710.1	Barley	cytosol, nucleus	2.21	8.7

Protein Annotations

EnsemblPlants:Bra021389.1	EnsemblPlants:Bra021389.1-P	EnsemblPlantsGene:Bra021389	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF953	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002544CC7	UniProt:M4DXZ3	MapMan:15.5.2.1	:	:	:

Description

AT2G47190 (E=5e-135) ATMYB2, MYB2 | MYB2 (MYB DOMAIN PROTEIN 2); DNA binding / calmodulin binding / transcription activator/ transcription factor

Coordinates

chrA01:-:25415291..25416365

Molecular Weight (calculated)

31444.4 Da

IEP (calculated)

5.058

GRAVY (calculated)

-0.830

Length

272 amino acids

Sequence
(BLAST)

001: MENYEQNLNS PAHEEDSDVR KGPWTEEEDA ILVNFVAIHG DARWNHIARS SGLKRTGKSC RLRWLNYLRP DVRRGNITLE EQFMILKLHS LWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KQAKHLRCDV NSNLFKETMK NVWMPRLMER INAQTPSPTY DPVESVITDP GQPIDKQTPV EPGFVLNPDQ HRHQFVQASE
201: LCATSSNSPA ETLSDVQDRV VNGSGYDPAG QTGFLELNDW GCDDGDNVWT DDESFWFLQD QLCHETTSFS YN

Best Arabidopsis Sequence Match ( AT2G47190.1 )
(BLAST)

001: MEDYERINSN SPTHEEDSDV RKGPWTEEED AILVNFVSIH GDARWNHIAR SSGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQFMILKLH SLWGNRWSKI
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN

Arabidopsis Description

ATMYB2ATMYB2 [Source:UniProtKB/TrEMBL;Acc:Q39028]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.