Factsheet for Bra040274.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99864	Canola	nucleus	99.38	99.38
CDY34949	Canola	nucleus	99.38	99.38
Bra001202.1-P	Field mustard	nucleus	82.19	86.51
Bra029582.1-P	Field mustard	nucleus	85.94	85.4
GSMUA_Achr4P19990_001	Banana	nucleus	30.0	75.0
GSMUA_Achr5P21090_001	Banana	nucleus	38.75	68.13
Bra020624.1-P	Field mustard	nucleus	66.56	66.98
Bra010021.1-P	Field mustard	nucleus	66.25	65.63
Bra010022.1-P	Field mustard	nucleus	66.25	65.63
PGSC0003DMT400011745	Potato	nucleus	45.94	62.82
PGSC0003DMT400011750	Potato	nucleus	44.69	62.17
Solyc01g057910.2.1	Tomato	nucleus	54.06	60.28
PGSC0003DMT400022600	Potato	nucleus	55.94	60.27
Solyc12g099130.1.1	Tomato	nucleus	44.06	60.0
Solyc12g099120.1.1	Tomato	nucleus	46.25	59.92
VIT_05s0077g00500.t01	Wine grape	nucleus	54.69	57.19
GSMUA_Achr3P12730_001	Banana	nucleus	30.31	55.43
GSMUA_Achr8P10800_001	Banana	nucleus	43.75	54.69
GSMUA_Achr11P...	Banana	nucleus	44.06	53.82
GSMUA_Achr11P...	Banana	nucleus	44.06	53.41
GSMUA_Achr9P16640_001	Banana	nucleus	42.81	52.69
PGSC0003DMT400011748	Potato	nucleus	47.5	51.53
GSMUA_AchrUn_...	Banana	nucleus	42.81	51.31
GSMUA_AchrUn_...	Banana	nucleus	45.0	51.25
GSMUA_Achr1P24960_001	Banana	nucleus	42.81	50.74
Solyc05g053330.2.1	Tomato	nucleus	49.38	49.69
Solyc12g099140.1.1	Tomato	nucleus	46.56	49.67
PGSC0003DMT400069841	Potato	nucleus	50.0	49.38
GSMUA_Achr8P29910_001	Banana	nucleus	41.25	49.07
GSMUA_AchrUn_...	Banana	nucleus	39.38	45.82
Bra021389.1-P	Field mustard	nucleus	38.75	45.59
TraesCS4A01G124900.1	Wheat	nucleus	45.0	45.14
TraesCS4D01G181100.1	Wheat	nucleus	45.0	45.14
TraesCS4B01G179500.1	Wheat	nucleus	44.69	44.97
TraesCSU01G069000.1	Wheat	nucleus	40.62	44.83
Bra004473.1-P	Field mustard	nucleus	38.44	44.73
Bra039108.1-P	Field mustard	nucleus	28.44	44.39
TraesCS4D01G142900.1	Wheat	nucleus	40.62	44.37
TraesCS4A01G172200.1	Wheat	nucleus	40.0	44.29
HORVU4Hr1G028780.1	Barley	nucleus	40.31	44.03
TraesCS5B01G093000.1	Wheat	nucleus	37.81	43.53
TraesCS3D01G413700.1	Wheat	nucleus	39.69	43.34
TraesCS5D01G099100.1	Wheat	nucleus	37.5	43.17
TraesCS5A01G087100.1	Wheat	nucleus	37.5	43.17
Bra001005.1-P	Field mustard	nucleus	27.81	42.79
HORVU5Hr1G022690.1	Barley	nucleus	37.5	42.55
GSMUA_Achr7P05570_001	Banana	nucleus	35.94	42.28
TraesCS3D01G014800.1	Wheat	nucleus	36.56	42.09
KXG39500	Sorghum	nucleus	44.06	41.96
Bra039067.1-P	Field mustard	nucleus	30.31	41.81
TraesCS1D01G078600.1	Wheat	nucleus	42.19	41.8
TraesCS3B01G453300.1	Wheat	nucleus	40.0	41.69
TraesCS1A01G076200.1	Wheat	nucleus	42.19	41.67
HORVU1Hr1G016420.1	Barley	nucleus	42.19	41.54
Bra025300.1-P	Field mustard	nucleus	30.0	41.38
EES00624	Sorghum	nucleus	39.38	41.18
TraesCS1B01G094500.1	Wheat	nucleus	41.88	41.1
Zm00001d028930_P001	Maize	nucleus	43.12	41.07
TraesCS3A01G418100.1	Wheat	nucleus	39.06	40.58
Zm00001d040594_P001	Maize	nucleus	37.81	39.93
Zm00001d047579_P001	Maize	nucleus	43.44	39.83
GSMUA_Achr11P...	Banana	nucleus	42.19	39.24
HORVU4Hr1G052490.5	Barley	nucleus, plastid	44.38	38.48
Bra004297.1-P	Field mustard	nucleus	33.75	38.03
GSMUA_Achr3P08370_001	Banana	nucleus	34.06	37.98
Bra012482.1-P	Field mustard	nucleus	33.44	37.68
Bra004041.1-P	Field mustard	nucleus	33.12	37.59
HORVU3Hr1G092820.1	Barley	nucleus	38.75	37.46
KXG36991	Sorghum	nucleus	40.0	37.43
Zm00001d009066_P001	Maize	nucleus	37.19	37.42
Zm00001d007191_P001	Maize	nucleus	39.69	36.6
Bra033948.1-P	Field mustard	nucleus	32.5	36.49
Zm00001d048647_P001	Maize	nucleus	39.38	35.8
TraesCS2D01G096000.1	Wheat	nucleus	36.25	35.37
TraesCS2A01G097200.1	Wheat	nucleus	35.94	35.28
Bra024760.1-P	Field mustard	nucleus	29.06	34.96
TraesCS2B01G112600.1	Wheat	nucleus	36.25	34.94
Zm00001d010933_P001	Maize	nucleus	40.0	34.88
Zm00001d030644_P001	Maize	nucleus	38.12	34.76
EES17207	Sorghum	nucleus	36.25	34.42
EES10257	Sorghum	nucleus	38.75	33.97
Bra015029.1-P	Field mustard	nucleus	28.75	33.95
Os05t0132700-01	Rice	nucleus	22.5	33.49
Bra020289.1-P	Field mustard	nucleus	24.38	33.05
Zm00001d024726_P001	Maize	nucleus	36.25	32.68
Bra002533.1-P	Field mustard	nucleus	24.06	32.49
Bra001941.1-P	Field mustard	nucleus	27.5	32.12
Bra006694.1-P	Field mustard	nucleus	23.75	31.41
Bra028369.1-P	Field mustard	nucleus	26.88	31.39
HORVU2Hr1G016380.1	Barley	nucleus	35.31	31.13
KXG21220	Sorghum	nucleus	39.38	31.03
Bra025410.1-P	Field mustard	nucleus	25.94	30.97
Bra018223.1-P	Field mustard	nucleus	24.38	30.95
Zm00001d024725_P001	Maize	nucleus	39.06	30.79
Bra020744.1-P	Field mustard	nucleus	24.69	30.74
Bra006977.1-P	Field mustard	nucleus	22.81	29.8
Bra036202.1-P	Field mustard	nucleus	24.69	29.59
Bra028550.1-P	Field mustard	nucleus	22.19	29.58
KXG21221	Sorghum	nucleus	38.12	25.58

Protein Annotations

EnsemblPlants:Bra040274.1	EnsemblPlants:Bra040274.1-P	EnsemblPlantsGene:Bra040274	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF743	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002544B0F	UniProt:M4FGP6	MapMan:15.5.2.1	:	:

Description

AT3G06490 (E=1e-148) MYB108, AtMYB108, BOS1 | MYB108 (myb domain protein 108); DNA binding / transcription factor

Coordinates

chrA01:-:28148938..28151090

Molecular Weight (calculated)

36921.6 Da

IEP (calculated)

4.822

GRAVY (calculated)

-0.884

Length

320 amino acids

Sequence
(BLAST)

001: MDERGRRLKN NNMEDDMDLK RGPWTAEEDC KLINYIATNG EGRWNSLSRC AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASAAA LTNATTTGSA ATSSCIITSN NQFMTYDYNN NSMGQQFGVM
201: NNNDYITPEN SSVALSPVSD LTDYYNAPNP NPEYHSGQVG NSYYPDQNLV GPQMLPDDYF DYSRLLDEDV PAMQEQSNLN WFENINGAAS SSDSLWDIGQ
301: NDEDFWFLQQ QQQFNNNGNF

Best Arabidopsis Sequence Match ( AT3G06490.1 )
(BLAST)

001: MDEKGRSLKN NNMEDEMDLK RGPWTAEEDF KLMNYIATNG EGRWNSLSRC AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF

Arabidopsis Description

MYB108Transcription factor MYB108 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDE1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.