Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G142900.1 | Wheat | nucleus | 97.23 | 95.9 |
| TraesCSU01G069000.1 | Wheat | nucleus | 95.5 | 95.17 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 91.35 | 90.1 |
| Os11t0684000-01 | Rice | nucleus | 67.47 | 68.42 |
| CDX85422 | Canola | nucleus | 41.52 | 65.57 |
| CDX86220 | Canola | nucleus | 41.52 | 62.18 |
| TraesCS5A01G087100.1 | Wheat | nucleus | 57.79 | 60.07 |
| PGSC0003DMT400011745 | Potato | nucleus | 42.21 | 52.14 |
| PGSC0003DMT400011750 | Potato | nucleus | 41.18 | 51.74 |
| Solyc12g099130.1.1 | Tomato | nucleus | 41.87 | 51.49 |
| Solyc12g099120.1.1 | Tomato | nucleus | 43.25 | 50.61 |
| Zm00001d048647_P001 | Maize | nucleus | 60.9 | 50.0 |
| EES10257 | Sorghum | nucleus | 62.28 | 49.32 |
| Solyc01g057910.2.1 | Tomato | nucleus | 47.75 | 48.08 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 50.87 | 48.04 |
| AT1G48000.1 | Thale cress | nucleus | 39.79 | 47.33 |
| PGSC0003DMT400022600 | Potato | nucleus | 48.1 | 46.8 |
| KRH02414 | Soybean | nucleus | 49.13 | 44.1 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 48.1 | 43.57 |
| Solyc05g053330.2.1 | Tomato | nucleus | 47.4 | 43.08 |
| PGSC0003DMT400011748 | Potato | nucleus | 43.94 | 43.05 |
| KRH50671 | Soybean | nucleus | 48.1 | 42.77 |
| Bra020624.1-P | Field mustard | nucleus | 46.71 | 42.45 |
| CDY05611 | Canola | nucleus | 46.71 | 42.45 |
| CDY33891 | Canola | nucleus | 46.71 | 42.45 |
| PGSC0003DMT400069841 | Potato | nucleus | 47.4 | 42.28 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 44.98 | 42.21 |
| Bra001202.1-P | Field mustard | nucleus | 44.29 | 42.11 |
| KRG97314 | Soybean | nucleus | 49.48 | 41.94 |
| KRH36928 | Soybean | nucleus | 49.13 | 41.76 |
| AT5G49620.2 | Thale cress | nucleus | 45.67 | 41.12 |
| CDY24688 | Canola | nucleus | 44.98 | 40.75 |
| CDY05270 | Canola | nucleus | 44.98 | 40.37 |
| Bra029582.1-P | Field mustard | nucleus | 44.98 | 40.37 |
| Solyc12g099140.1.1 | Tomato | nucleus | 41.87 | 40.33 |
| Bra010021.1-P | Field mustard | nucleus | 44.98 | 40.25 |
| Bra010022.1-P | Field mustard | nucleus | 44.98 | 40.25 |
| CDY34949 | Canola | nucleus | 44.29 | 40.0 |
| CDX99864 | Canola | nucleus | 44.29 | 40.0 |
| Bra040274.1-P | Field mustard | nucleus | 44.29 | 40.0 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 44.64 | 39.57 |
| AT3G06490.1 | Thale cress | nucleus | 43.94 | 39.32 |
| TraesCS3A01G229500.1 | Wheat | nucleus | 28.03 | 38.57 |
| TraesCS1A01G406600.1 | Wheat | mitochondrion | 33.22 | 38.55 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 42.56 | 37.96 |
| CDY70282 | Canola | nucleus | 37.02 | 36.39 |
| TraesCS3A01G044700.1 | Wheat | nucleus | 40.48 | 33.81 |
| TraesCS5A01G083100.1 | Wheat | nucleus | 25.95 | 31.65 |
| TraesCS2A01G363800.1 | Wheat | nucleus | 27.68 | 30.77 |
| TraesCS3A01G535100.1 | Wheat | nucleus | 27.68 | 30.77 |
| TraesCS5A01G512700.1 | Wheat | nucleus | 26.3 | 30.65 |
| TraesCS4A01G173300.2 | Wheat | nucleus | 24.91 | 30.25 |
| TraesCS1A01G042700.1 | Wheat | nucleus | 26.99 | 29.66 |
| CDX74100 | Canola | nucleus | 34.26 | 29.38 |
| TraesCS6A01G227700.1 | Wheat | nucleus | 27.68 | 29.2 |
| CDY58600 | Canola | nucleus | 21.8 | 19.5 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G172200.1 | EnsemblPlantsGene:TraesCS4A01G172200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF548 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:437482822..437484080
Molecular Weight (calculated)
32357.6 Da
IEP (calculated)
5.997
GRAVY (calculated)
-0.623
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVVLQSRSS NSMAAEPEEE TELRRGPWTV DEDLTLINYI ADHGEGRWNA LARAAGLRRT GKSCRLRWLN YLRPDVKRGN FTADEQLLIL DLHSRWGNRW
101: SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL NCDVGSATFK DAMRYLWMPR LVERIHAAAG DPTIGDTSCA SGVRSMATTA ATATTYPENN SAASAVTTSR
201: SASSGSFTSE LCGEEKNLHV HGSGEKTTSG GDWMQEADQE FWAMHMQIQP EDGGLFHVDH ELSGWVQGFS DVGVSADNLW SLEDIWKMQ
101: SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL NCDVGSATFK DAMRYLWMPR LVERIHAAAG DPTIGDTSCA SGVRSMATTA ATATTYPENN SAASAVTTSR
201: SASSGSFTSE LCGEEKNLHV HGSGEKTTSG GDWMQEADQE FWAMHMQIQP EDGGLFHVDH ELSGWVQGFS DVGVSADNLW SLEDIWKMQ
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
Arabidopsis Description
AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.