Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G043300.1 | Wheat | nucleus | 87.83 | 90.94 |
| TraesCS1B01G055200.1 | Wheat | nucleus | 91.25 | 89.55 |
| HORVU1Hr1G008810.3 | Barley | nucleus | 83.27 | 84.88 |
| GSMUA_Achr6P15370_001 | Banana | nucleus | 44.11 | 55.5 |
| GSMUA_Achr10P... | Banana | nucleus | 45.25 | 50.42 |
| Zm00001d035605_P001 | Maize | nucleus | 59.32 | 47.71 |
| PGSC0003DMT400040149 | Potato | nucleus | 39.54 | 47.71 |
| TraesCS5A01G083100.1 | Wheat | nucleus | 42.97 | 47.68 |
| TraesCS3A01G535100.1 | Wheat | nucleus | 46.77 | 47.31 |
| Solyc11g073120.1.1 | Tomato | nucleus | 38.78 | 47.0 |
| Solyc06g005330.2.1 | Tomato | nucleus | 41.83 | 46.61 |
| GSMUA_Achr7P18200_001 | Banana | nucleus | 42.59 | 46.47 |
| OQU77249 | Sorghum | nucleus | 54.37 | 46.43 |
| GSMUA_Achr11P... | Banana | nucleus | 42.21 | 46.06 |
| GSMUA_Achr5P28350_001 | Banana | nucleus | 41.44 | 45.99 |
| EES17592 | Sorghum | nucleus | 58.17 | 45.81 |
| VIT_06s0004g04140.t01 | Wine grape | nucleus | 44.49 | 45.7 |
| AT5G59780.3 | Thale cress | nucleus | 40.68 | 45.53 |
| CDY70097 | Canola | nucleus | 39.54 | 44.07 |
| Bra020289.1-P | Field mustard | nucleus | 39.54 | 44.07 |
| TraesCS4A01G173300.2 | Wheat | nucleus | 39.54 | 43.7 |
| CDX71075 | Canola | nucleus | 39.92 | 43.57 |
| KRH10298 | Soybean | nucleus | 41.83 | 43.14 |
| CDY49581 | Canola | nucleus | 38.78 | 43.04 |
| Bra002533.1-P | Field mustard | nucleus | 38.78 | 43.04 |
| AT3G46130.1 | Thale cress | nucleus | 42.21 | 43.02 |
| Bra018223.1-P | Field mustard | nucleus | 41.06 | 42.86 |
| CDX80230 | Canola | nucleus | 38.4 | 42.62 |
| Bra006694.1-P | Field mustard | nucleus | 38.78 | 42.15 |
| KRH23019 | Soybean | nucleus | 42.21 | 42.05 |
| CDX88722 | Canola | nucleus | 38.4 | 41.74 |
| KRH29850 | Soybean | nucleus | 39.92 | 39.47 |
| Zm00001d035604_P001 | Maize | nucleus | 55.13 | 39.4 |
| CDX86040 | Canola | nucleus | 41.06 | 38.85 |
| CDX99125 | Canola | nucleus | 41.06 | 38.85 |
| CDX86041 | Canola | nucleus | 41.06 | 38.85 |
| KRH24842 | Soybean | nucleus | 39.16 | 38.72 |
| TraesCS3A01G229500.1 | Wheat | nucleus | 26.62 | 33.33 |
| TraesCS5A01G512700.1 | Wheat | nucleus | 30.8 | 32.66 |
| TraesCS1A01G406600.1 | Wheat | mitochondrion | 28.52 | 30.12 |
| TraesCS5A01G087100.1 | Wheat | nucleus | 29.66 | 28.06 |
| TraesCS6A01G227700.1 | Wheat | nucleus | 28.14 | 27.01 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 29.66 | 26.99 |
| TraesCS2A01G363800.1 | Wheat | nucleus | 26.62 | 26.92 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 29.66 | 24.45 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 30.04 | 24.38 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 28.14 | 24.03 |
| TraesCS3A01G044700.1 | Wheat | nucleus | 29.28 | 22.25 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 26.62 | 21.47 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G042700.1 | EnsemblPlantsGene:TraesCS1A01G042700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF591 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:23339618..23340516
Molecular Weight (calculated)
29530.3 Da
IEP (calculated)
6.063
GRAVY (calculated)
-0.694
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MCNNSGGRGG ARAARKGPWA ENEDAQLVWF VRLLGERRWD FLAQVSGLRR TGKSCRLRWV NYLHPGLKRG RITADEERLI LSLHAEWGSR WSRIARKLPG
101: RTDNEIKNYW RTHMRKKAQE EKMLAKKKAV AEASSSTTSL TTTTCSASAT ATSSRAATTE APQESGTSMD DEAEEEATTS VSEENKAEVV QYCSAVDIDQ
201: LWNDIAASES YPEMMMSWGS AGNVAVAAPV EPSSPVWEFC EDYSLWRIDD HEYYNKIDQH ALN
101: RTDNEIKNYW RTHMRKKAQE EKMLAKKKAV AEASSSTTSL TTTTCSASAT ATSSRAATTE APQESGTSMD DEAEEEATTS VSEENKAEVV QYCSAVDIDQ
201: LWNDIAASES YPEMMMSWGS AGNVAVAAPV EPSSPVWEFC EDYSLWRIDD HEYYNKIDQH ALN
001: MKMMQEEGNR KGPWTEQEDI LLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP GLKRGKMTPQ EERLVLELHA KWGNRWSKIA RKLPGRTDNE
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG
Arabidopsis Description
ATMYB48myb domain protein 48 [Source:TAIR;Acc:AT3G46130]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.