Factsheet for PGSC0003DMT400040149

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g073120.1.1	Tomato	nucleus	96.79	97.23
GSMUA_Achr2P16200_001	Banana	nucleus	53.67	57.07
VIT_06s0004g04140.t01	Wine grape	nucleus	63.76	54.3
GSMUA_Achr9P28370_001	Banana	nucleus	53.21	54.21
PGSC0003DMT400072687	Potato	nucleus	33.49	53.68
GSMUA_Achr6P15370_001	Banana	nucleus	51.38	53.59
GSMUA_Achr10P...	Banana	nucleus	55.05	53.1
AT5G59780.3	Thale cress	nucleus	55.5	51.49
KRH10298	Soybean	nucleus	59.63	50.98
GSMUA_Achr10P...	Banana	nucleus	49.54	50.94
TraesCS5B01G089200.1	Wheat	nucleus	55.05	50.63
TraesCS5D01G095600.1	Wheat	nucleus	55.05	50.63
HORVU5Hr1G021750.2	Barley	nucleus	55.05	50.63
TraesCS5A01G083100.1	Wheat	nucleus	54.59	50.21
KXG29192	Sorghum	nucleus	52.29	50.0
KRH23019	Soybean	nucleus	60.09	49.62
Bra018223.1-P	Field mustard	nucleus	57.34	49.6
CDY70097	Canola	nucleus	53.67	49.58
Bra020289.1-P	Field mustard	nucleus	53.67	49.58
CDY49581	Canola	nucleus	53.67	49.37
Bra002533.1-P	Field mustard	nucleus	53.67	49.37
TraesCS4D01G142300.1	Wheat	nucleus	53.67	49.16
TraesCS4B01G143700.1	Wheat	nucleus	53.67	49.16
Zm00001d048623_P002	Maize	nucleus	51.38	49.12
GSMUA_Achr11P...	Banana	nucleus	54.13	48.96
CDX71075	Canola	nucleus	54.13	48.96
GSMUA_Achr5P28350_001	Banana	nucleus	53.21	48.95
Os11t0700500-01	Rice	nucleus	53.21	48.95
Bra006694.1-P	Field mustard	nucleus	54.13	48.76
TraesCS4A01G173300.2	Wheat	nucleus	53.21	48.74
GSMUA_Achr10P...	Banana	nucleus	52.75	48.73
KRH24842	Soybean	nucleus	59.17	48.5
KRH29850	Soybean	nucleus	59.17	48.5
CDX88722	Canola	nucleus	53.67	48.35
CDX80230	Canola	nucleus	52.29	48.1
KXG23736	Sorghum	nucleus	52.75	47.92
AT3G46130.1	Thale cress	nucleus	56.42	47.67
Zm00001d030678_P001	Maize	nucleus	52.75	47.52
GSMUA_Achr8P02640_001	Banana	nucleus	50.92	47.03
Os12t0567300-00	Rice	nucleus	51.83	46.69
Zm00001d041576_P001	Maize	nucleus	52.29	45.6
GSMUA_Achr8P34340_001	Banana	nucleus	50.92	45.31
CDX86041	Canola	nucleus	57.34	44.96
CDX99125	Canola	nucleus	57.34	44.96
GSMUA_Achr7P18200_001	Banana	nucleus	49.54	44.81
CDX86040	Canola	nucleus	56.88	44.6
TraesCS1D01G043300.1	Wheat	nucleus	50.0	42.91
TraesCS1B01G055200.1	Wheat	nucleus	50.46	41.04
TraesCS1A01G042700.1	Wheat	nucleus	47.71	39.54
HORVU1Hr1G008810.3	Barley	nucleus	46.79	39.53
TraesCS3D01G540600.1	Wheat	nucleus	45.87	39.06
TraesCS3A01G535100.1	Wheat	nucleus	45.87	38.46
TraesCS3B01G612200.2	Wheat	nucleus	46.33	38.26
PGSC0003DMT400069955	Potato	nucleus	37.61	35.81
Os01t0975300-01	Rice	vacuole	34.4	35.71
KXG29190	Sorghum	nucleus	32.57	33.49
PGSC0003DMT400001278	Potato	nucleus	31.19	32.85
PGSC0003DMT400037716	Potato	nucleus	40.83	32.6
PGSC0003DMT400003796	Potato	nucleus	37.61	32.41
OQU77249	Sorghum	nucleus	45.41	32.14
PGSC0003DMT400003479	Potato	nucleus	34.86	31.93
PGSC0003DMT400014383	Potato	nucleus	40.37	31.65
Zm00001d035605_P001	Maize	nucleus	46.79	31.19
EES17592	Sorghum	nucleus	47.25	30.84
PGSC0003DMT400011750	Potato	nucleus	32.11	30.43
PGSC0003DMT400011745	Potato	nucleus	32.11	29.91
PGSC0003DMT400022600	Potato	nucleus	38.07	27.95
Zm00001d035604_P001	Maize	nucleus	45.41	26.9
PGSC0003DMT400011748	Potato	nucleus	36.24	26.78
PGSC0003DMT400069841	Potato	nucleus	36.24	24.38

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102586025	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1B9E2	InterPro:Myb_dom	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400015536	PGSC:PGSC0003DMG400015536	EnsemblPlants:PGSC0003DMT400040149	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF484
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002965098	RefSeq:XP_006363368.1	SEG:seg

Description

MYB1-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400015536]

Coordinates

chr11:+:45304491..45306368

Molecular Weight (calculated)

25982.7 Da

IEP (calculated)

9.487

GRAVY (calculated)

-1.039

Length

218 amino acids

Sequence
(BLAST)

001: MVQEEIMRRG PWTEEEDVQL LFYVKLFGDR RWDFLAKVSG LKRTGKSCRL RWVNYLNPDL KHGKMTPQEE RLVLELHSKW GNRWSRIARK IPGRTDNEIK
101: NYWRTHMRKK AQEQRKKSSI SPSSSSSSSS ITHEENERNF YDTGGIKLLQ VEGEKKSSDQ EQHGKSMKVY SMDEIWKDIE LLEENEEKMN KPIMGSISPL
201: WDYSLDSLWK DFDWSSFR

Best Arabidopsis Sequence Match ( AT3G46130.1 )
(BLAST)

001: MKMMQEEGNR KGPWTEQEDI LLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP GLKRGKMTPQ EERLVLELHA KWGNRWSKIA RKLPGRTDNE
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG

Arabidopsis Description

ATMYB48myb domain protein 48 [Source:TAIR;Acc:AT3G46130]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.