Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g099140.1.1 | Tomato | nucleus | 94.24 | 92.67 |
| GSMUA_Achr4P19990_001 | Banana | nucleus | 31.53 | 72.66 |
| CDX85422 | Canola | nucleus | 43.39 | 69.95 |
| GSMUA_Achr5P21090_001 | Banana | nucleus | 41.36 | 67.03 |
| CDX86220 | Canola | nucleus | 43.05 | 65.8 |
| PGSC0003DMT400011750 | Potato | nucleus | 47.8 | 61.3 |
| PGSC0003DMT400022600 | Potato | nucleus | 61.36 | 60.94 |
| PGSC0003DMT400011745 | Potato | nucleus | 48.14 | 60.68 |
| GSMUA_Achr3P12730_001 | Banana | nucleus | 33.56 | 56.57 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 54.58 | 52.61 |
| GSMUA_Achr11P... | Banana | nucleus | 46.44 | 51.89 |
| GSMUA_Achr8P10800_001 | Banana | nucleus | 44.41 | 51.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.1 | 50.94 |
| GSMUA_Achr11P... | Banana | nucleus | 45.08 | 50.76 |
| Bra001202.1-P | Field mustard | nucleus | 51.86 | 50.33 |
| KRH02414 | Soybean | nucleus | 53.9 | 49.38 |
| PGSC0003DMT400001278 | Potato | nucleus | 34.58 | 49.28 |
| GSMUA_Achr1P24960_001 | Banana | nucleus | 44.75 | 48.89 |
| GSMUA_Achr9P16640_001 | Banana | nucleus | 43.05 | 48.85 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.1 | 48.4 |
| KRH50671 | Soybean | nucleus | 52.88 | 48.0 |
| CDY33891 | Canola | nucleus | 51.53 | 47.8 |
| CDY05611 | Canola | nucleus | 51.53 | 47.8 |
| Bra020624.1-P | Field mustard | nucleus | 51.53 | 47.8 |
| CDY24688 | Canola | nucleus | 51.53 | 47.65 |
| CDY34949 | Canola | nucleus | 51.53 | 47.5 |
| CDX99864 | Canola | nucleus | 51.53 | 47.5 |
| Bra040274.1-P | Field mustard | nucleus | 51.53 | 47.5 |
| PGSC0003DMT400069841 | Potato | nucleus | 51.86 | 47.22 |
| CDY05270 | Canola | nucleus | 51.19 | 46.89 |
| Bra010021.1-P | Field mustard | nucleus | 51.19 | 46.75 |
| Bra010022.1-P | Field mustard | nucleus | 51.19 | 46.75 |
| Bra029582.1-P | Field mustard | nucleus | 50.85 | 46.58 |
| PGSC0003DMT400072687 | Potato | nucleus | 21.02 | 45.59 |
| KRG97314 | Soybean | nucleus | 52.2 | 45.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.69 | 44.73 |
| GSMUA_Achr8P29910_001 | Banana | nucleus | 40.68 | 44.61 |
| KRH36928 | Soybean | nucleus | 51.19 | 44.41 |
| CDY70282 | Canola | nucleus | 44.07 | 44.22 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 43.05 | 43.94 |
| TraesCSU01G069000.1 | Wheat | nucleus | 42.71 | 43.45 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 43.05 | 43.34 |
| TraesCS5B01G093000.1 | Wheat | nucleus | 40.68 | 43.17 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 42.71 | 43.0 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 40.34 | 42.81 |
| TraesCS4B01G179500.1 | Wheat | nucleus | 46.1 | 42.77 |
| GSMUA_Achr7P05570_001 | Banana | nucleus | 39.32 | 42.65 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 46.1 | 42.63 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 46.1 | 42.63 |
| TraesCS5A01G087100.1 | Wheat | nucleus | 40.0 | 42.45 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 40.34 | 42.2 |
| PGSC0003DMT400014383 | Potato | nucleus | 37.97 | 40.29 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 39.66 | 39.93 |
| KXG39500 | Sorghum | nucleus | 45.42 | 39.88 |
| PGSC0003DMT400037716 | Potato | nucleus | 36.61 | 39.56 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 43.05 | 39.32 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 36.95 | 39.21 |
| Zm00001d028930_P001 | Maize | nucleus | 44.41 | 38.99 |
| TraesCS1B01G094500.1 | Wheat | nucleus | 43.05 | 38.96 |
| EES00624 | Sorghum | nucleus | 40.34 | 38.89 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 42.71 | 38.89 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 42.71 | 38.77 |
| Zm00001d040594_P001 | Maize | nucleus | 39.66 | 38.61 |
| GSMUA_Achr11P... | Banana | nucleus | 44.75 | 38.37 |
| TraesCS3B01G453300.1 | Wheat | nucleus | 39.66 | 38.11 |
| PGSC0003DMT400069955 | Potato | nucleus | 29.15 | 37.55 |
| Zm00001d047579_P001 | Maize | nucleus | 44.41 | 37.54 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 46.44 | 37.13 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 38.64 | 37.01 |
| PGSC0003DMT400040149 | Potato | nucleus | 26.78 | 36.24 |
| CDX74100 | Canola | nucleus | 41.36 | 36.2 |
| KXG36991 | Sorghum | nucleus | 41.69 | 35.96 |
| EES17207 | Sorghum | nucleus | 41.02 | 35.91 |
| Zm00001d009066_P001 | Maize | nucleus | 38.64 | 35.85 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 39.32 | 35.58 |
| GSMUA_Achr3P08370_001 | Banana | nucleus | 34.58 | 35.54 |
| Zm00001d048647_P001 | Maize | nucleus | 42.37 | 35.51 |
| Zm00001d007191_P001 | Maize | nucleus | 41.69 | 35.45 |
| TraesCS2D01G096000.1 | Wheat | nucleus | 39.32 | 35.37 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 39.32 | 35.05 |
| TraesCS2B01G112600.1 | Wheat | nucleus | 39.32 | 34.94 |
| Zm00001d024726_P001 | Maize | nucleus | 41.36 | 34.37 |
| EES10257 | Sorghum | nucleus | 41.69 | 33.7 |
| PGSC0003DMT400003479 | Potato | nucleus | 27.12 | 33.61 |
| Zm00001d030644_P001 | Maize | nucleus | 39.66 | 33.33 |
| PGSC0003DMT400003796 | Potato | nucleus | 28.47 | 33.2 |
| Zm00001d010933_P001 | Maize | nucleus | 40.68 | 32.7 |
| KXG21220 | Sorghum | nucleus | 43.39 | 31.53 |
| Zm00001d024725_P001 | Maize | nucleus | 43.05 | 31.28 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 37.29 | 30.3 |
| Os05t0132700-01 | Rice | nucleus | 21.36 | 29.3 |
| KXG21221 | Sorghum | nucleus | 43.39 | 26.83 |
| CDY58600 | Canola | nucleus | 22.03 | 20.12 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102587827 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1A032 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG402004611 | PGSC:PGSC0003DMG402004611 | EnsemblPlants:PGSC0003DMT400011748 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF494 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000296C00F | RefSeq:XP_006349849.1 | SEG:seg |
Description
MYB transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG402004611]
Coordinates
chr12:+:59925024..59927050
Molecular Weight (calculated)
34474.9 Da
IEP (calculated)
6.284
GRAVY (calculated)
-0.955
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHHHHQYVD FGLRSEDNID SNDRKGDENN NNLDLKRGSW TVEEDFTLMN HIALHGEGRW NSLARSAGLK RTGKSCRLRW LNYLRPDVRR GNITLEEQLL
101: ILQLHSRWGN RWSKIAQHLP GRTDNEIKNY WRTRVQKQAK QLKCDVNSKE FKDTLHYLWI PRLVERIQAS SNSNNQVNIQ KTNENIIINN NNNNIVPNMN
201: FTQENYSSTT TTTSSENSIG TQISDMSDNC YTNYPLNQGD YGEILISPTG GYFQQGDIFD DNNHHQNMSQ LFLDDNVCDN LWNIDDMLFL QQQLN
101: ILQLHSRWGN RWSKIAQHLP GRTDNEIKNY WRTRVQKQAK QLKCDVNSKE FKDTLHYLWI PRLVERIQAS SNSNNQVNIQ KTNENIIINN NNNNIVPNMN
201: FTQENYSSTT TTTSSENSIG TQISDMSDNC YTNYPLNQGD YGEILISPTG GYFQQGDIFD DNNHHQNMSQ LFLDDNVCDN LWNIDDMLFL QQQLN
001: MDEKGRSLKN NNMEDEMDLK RGPWTAEEDF KLMNYIATNG EGRWNSLSRC AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
Arabidopsis Description
MYB108Transcription factor MYB108 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDE1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.