Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G076200.1 | Wheat | nucleus | 93.85 | 94.14 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 93.23 | 93.81 |
| TraesCS1B01G094500.1 | Wheat | nucleus | 93.85 | 93.56 |
| CDX85422 | Canola | nucleus | 36.31 | 64.48 |
| CDX86220 | Canola | nucleus | 36.31 | 61.14 |
| PGSC0003DMT400011745 | Potato | nucleus | 37.23 | 51.71 |
| PGSC0003DMT400011750 | Potato | nucleus | 35.69 | 50.43 |
| Solyc12g099130.1.1 | Tomato | nucleus | 36.0 | 49.79 |
| Solyc12g099120.1.1 | Tomato | nucleus | 37.54 | 49.39 |
| AT1G48000.1 | Thale cress | nucleus | 36.31 | 48.56 |
| Solyc01g057910.2.1 | Tomato | nucleus | 41.23 | 46.69 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 43.69 | 46.41 |
| PGSC0003DMT400022600 | Potato | nucleus | 41.54 | 45.45 |
| Bra001202.1-P | Field mustard | nucleus | 41.54 | 44.41 |
| HORVU3Hr1G056980.1 | Barley | nucleus | 28.92 | 44.34 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 38.77 | 43.0 |
| PGSC0003DMT400011748 | Potato | nucleus | 38.77 | 42.71 |
| CDY24688 | Canola | nucleus | 41.85 | 42.63 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 36.92 | 42.55 |
| Solyc12g099140.1.1 | Tomato | nucleus | 39.08 | 42.33 |
| Bra029582.1-P | Field mustard | nucleus | 41.85 | 42.24 |
| CDY05270 | Canola | nucleus | 41.85 | 42.24 |
| CDY34949 | Canola | nucleus | 41.54 | 42.19 |
| Bra040274.1-P | Field mustard | nucleus | 41.54 | 42.19 |
| CDX99864 | Canola | nucleus | 41.54 | 42.19 |
| CDY33891 | Canola | nucleus | 40.62 | 41.51 |
| Bra020624.1-P | Field mustard | nucleus | 40.62 | 41.51 |
| CDY05611 | Canola | nucleus | 40.62 | 41.51 |
| AT3G06490.1 | Thale cress | nucleus | 41.23 | 41.49 |
| AT5G49620.2 | Thale cress | nucleus | 40.62 | 41.12 |
| KRH02414 | Soybean | nucleus | 40.62 | 40.99 |
| KRH50671 | Soybean | nucleus | 40.62 | 40.62 |
| Solyc05g053330.2.1 | Tomato | nucleus | 39.69 | 40.57 |
| Bra010022.1-P | Field mustard | nucleus | 40.0 | 40.25 |
| Bra010021.1-P | Field mustard | nucleus | 40.0 | 40.25 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 40.92 | 40.18 |
| PGSC0003DMT400069841 | Potato | nucleus | 38.77 | 38.89 |
| KRH36928 | Soybean | nucleus | 39.38 | 37.65 |
| KRG97314 | Soybean | nucleus | 39.38 | 37.54 |
| GSMUA_Achr11P... | Banana | nucleus | 39.38 | 37.21 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 41.54 | 36.59 |
| CDY70282 | Canola | nucleus | 32.62 | 36.05 |
| HORVU5Hr1G021750.2 | Barley | nucleus | 25.23 | 34.6 |
| HORVU3Hr1G004050.1 | Barley | nucleus | 36.31 | 33.62 |
| HORVU0Hr1G005100.1 | Barley | nucleus | 23.08 | 33.33 |
| HORVU1Hr1G089770.2 | Barley | nucleus | 29.54 | 32.76 |
| HORVU2Hr1G087990.1 | Barley | nucleus | 25.85 | 32.43 |
| HORVU6Hr1G057670.3 | Barley | nucleus | 26.46 | 31.85 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 34.77 | 31.13 |
| CDX74100 | Canola | nucleus | 31.38 | 30.27 |
| HORVU4Hr1G084360.3 | Barley | nucleus | 24.62 | 29.74 |
| HORVU1Hr1G008810.3 | Barley | nucleus | 23.38 | 29.46 |
| CDY58600 | Canola | nucleus | 21.54 | 21.67 |
| HORVU5Hr1G022710.1 | Barley | cytosol, nucleus | 1.85 | 8.7 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G016420.1 | EnsemblPlantsGene:HORVU1Hr1G016420 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF921 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000B4701A1 | UniProt:A0A287EQX3 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:52186799..52188501
Molecular Weight (calculated)
35465.5 Da
IEP (calculated)
6.178
GRAVY (calculated)
-0.400
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMDKEYYRA CMGMEALPMS PAGLSAVTTE AAAMAVATAS EDEGDLKRGP WTAEEDMLLV DYISKHGEGR WNSLARCAGL RRTGKSCRLR WLNYLRPDVR
101: RGNITPEEQL LILDLHSRWG NRWSKIAQRL PGRTDNEVKN YWRTRVQKHA KQLHCDVNSD RFRDVVRQVW MPRLLERIQA ESSSSAAAAA AGVGVPALTR
201: AMSSPAGASQ YHYVDHASSG EPSRPVAVTM SPDTSSTLRS SLSSADASHG AHFPAWGAAT ATASIDGSTM QCATVDGGAI GGDHCVIHGD SLSGSWSELL
301: AATNIPDFEF GNFDDNLWSL EDIYC
101: RGNITPEEQL LILDLHSRWG NRWSKIAQRL PGRTDNEVKN YWRTRVQKHA KQLHCDVNSD RFRDVVRQVW MPRLLERIQA ESSSSAAAAA AGVGVPALTR
201: AMSSPAGASQ YHYVDHASSG EPSRPVAVTM SPDTSSTLRS SLSSADASHG AHFPAWGAAT ATASIDGSTM QCATVDGGAI GGDHCVIHGD SLSGSWSELL
301: AATNIPDFEF GNFDDNLWSL EDIYC
001: MDEKGRSLKN NNMEDEMDLK RGPWTAEEDF KLMNYIATNG EGRWNSLSRC AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
Arabidopsis Description
MYB108Transcription factor MYB108 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDE1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.