Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26800702
|
gfp PMID:
26800702
doi
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China jiangyq@nwafu.edu.cn., State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70282 | Canola | nucleus | 74.18 | 85.03 |
| Bra001202.1-P | Field mustard | nucleus | 74.78 | 82.89 |
| CDX99864 | Canola | nucleus | 64.99 | 68.44 |
| CDY34949 | Canola | nucleus | 64.99 | 68.44 |
| CDY24688 | Canola | nucleus | 61.42 | 64.89 |
| CDY05270 | Canola | nucleus | 61.13 | 63.98 |
| CDX85422 | Canola | nucleus | 32.64 | 60.11 |
| CDX86220 | Canola | nucleus | 32.05 | 55.96 |
| GSMUA_Achr4P19990_001 | Banana | nucleus | 21.07 | 55.47 |
| CDY33891 | Canola | nucleus | 52.23 | 55.35 |
| CDY05611 | Canola | nucleus | 51.93 | 55.03 |
| CDX86221 | Canola | nucleus | 10.98 | 52.86 |
| GSMUA_Achr5P21090_001 | Banana | nucleus | 27.89 | 51.65 |
| PGSC0003DMT400011745 | Potato | nucleus | 35.61 | 51.28 |
| PGSC0003DMT400011750 | Potato | nucleus | 34.72 | 50.87 |
| PGSC0003DMT400022600 | Potato | nucleus | 43.62 | 49.49 |
| Solyc01g057910.2.1 | Tomato | nucleus | 41.54 | 48.78 |
| Solyc12g099130.1.1 | Tomato | nucleus | 32.94 | 47.23 |
| Solyc12g099120.1.1 | Tomato | nucleus | 34.12 | 46.56 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 42.14 | 46.41 |
| GSMUA_Achr8P10800_001 | Banana | nucleus | 32.94 | 43.36 |
| GSMUA_Achr11P... | Banana | nucleus | 33.23 | 42.42 |
| GSMUA_Achr11P... | Banana | nucleus | 32.94 | 42.37 |
| PGSC0003DMT400011748 | Potato | nucleus | 36.2 | 41.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.42 | 41.28 |
| GSMUA_Achr9P16640_001 | Banana | nucleus | 31.75 | 41.15 |
| GSMUA_Achr1P24960_001 | Banana | nucleus | 32.94 | 41.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.05 | 40.45 |
| CDY00146 | Canola | nucleus | 19.88 | 40.36 |
| Solyc12g099140.1.1 | Tomato | nucleus | 35.61 | 40.0 |
| GSMUA_Achr3P12730_001 | Banana | nucleus | 20.47 | 39.43 |
| GSMUA_Achr8P29910_001 | Banana | nucleus | 31.16 | 39.03 |
| Solyc05g053330.2.1 | Tomato | nucleus | 36.8 | 38.99 |
| PGSC0003DMT400069841 | Potato | nucleus | 37.39 | 38.89 |
| CDX95420 | Canola | nucleus | 26.71 | 38.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.56 | 37.45 |
| CDY27504 | Canola | nucleus | 29.97 | 37.13 |
| CDY37512 | Canola | nucleus | 21.07 | 35.32 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 33.23 | 35.11 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 33.23 | 35.11 |
| TraesCS4B01G179500.1 | Wheat | nucleus | 32.94 | 34.91 |
| CDY49063 | Canola | nucleus | 21.36 | 34.78 |
| TraesCS5A01G087100.1 | Wheat | nucleus | 28.49 | 34.53 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 29.97 | 34.47 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 29.38 | 34.26 |
| TraesCS5B01G093000.1 | Wheat | nucleus | 28.19 | 34.17 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 28.19 | 34.17 |
| TraesCSU01G069000.1 | Wheat | nucleus | 29.38 | 34.14 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 29.67 | 34.13 |
| CDY58599 | Canola | nucleus | 10.68 | 33.96 |
| CDX91944 | Canola | nucleus | 20.77 | 33.82 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 29.38 | 33.79 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 28.19 | 33.69 |
| KXG39500 | Sorghum | nucleus | 33.53 | 33.63 |
| TraesCS3B01G453300.1 | Wheat | nucleus | 30.27 | 33.22 |
| GSMUA_Achr7P05570_001 | Banana | nucleus | 26.71 | 33.09 |
| Zm00001d028930_P001 | Maize | nucleus | 32.64 | 32.74 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 29.67 | 32.47 |
| CDY20036 | Canola | nucleus | 22.26 | 32.33 |
| CDX74303 | Canola | nucleus | 19.88 | 32.21 |
| CDY44433 | Canola | nucleus | 21.96 | 31.9 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 26.11 | 31.65 |
| Os05t0132700-01 | Rice | nucleus | 20.18 | 31.63 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 30.27 | 31.48 |
| CDX86471 | Canola | nucleus | 21.66 | 31.47 |
| CDY42115 | Canola | nucleus | 25.82 | 31.41 |
| GSMUA_Achr11P... | Banana | nucleus | 32.05 | 31.4 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 30.27 | 31.38 |
| EES00624 | Sorghum | nucleus | 28.49 | 31.37 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 29.97 | 31.27 |
| Zm00001d047579_P001 | Maize | nucleus | 32.34 | 31.23 |
| TraesCS1B01G094500.1 | Wheat | nucleus | 29.97 | 30.98 |
| CDX84981 | Canola | nucleus | 26.41 | 30.9 |
| KXG36991 | Sorghum | nucleus | 31.16 | 30.7 |
| Zm00001d040594_P001 | Maize | nucleus | 27.6 | 30.69 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 33.53 | 30.62 |
| CDY03859 | Canola | nucleus | 25.82 | 30.31 |
| CDX80085 | Canola | nucleus | 17.8 | 30.15 |
| CDY69488 | Canola | nucleus | 24.63 | 29.96 |
| CDX96033 | Canola | nucleus | 25.22 | 29.93 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 29.38 | 29.91 |
| CDY01906 | Canola | nucleus | 25.22 | 29.82 |
| CDY69953 | Canola | nucleus | 24.93 | 29.79 |
| Zm00001d007191_P001 | Maize | nucleus | 30.56 | 29.68 |
| Zm00001d009066_P001 | Maize | nucleus | 27.89 | 29.56 |
| CDY12705 | Canola | nucleus | 24.63 | 29.12 |
| Zm00001d048647_P001 | Maize | nucleus | 29.67 | 28.41 |
| CDY70097 | Canola | nucleus | 19.88 | 28.39 |
| CDX71075 | Canola | nucleus | 20.18 | 28.22 |
| CDY54094 | Canola | nucleus | 23.74 | 28.07 |
| GSMUA_Achr3P08370_001 | Banana | nucleus | 23.74 | 27.87 |
| TraesCS2D01G096000.1 | Wheat | nucleus | 27.0 | 27.74 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 26.71 | 27.61 |
| CDX80230 | Canola | nucleus | 19.29 | 27.43 |
| CDY49581 | Canola | nucleus | 19.29 | 27.43 |
| TraesCS2B01G112600.1 | Wheat | nucleus | 27.0 | 27.41 |
| Zm00001d030644_P001 | Maize | nucleus | 27.89 | 26.78 |
| EES10257 | Sorghum | nucleus | 28.78 | 26.58 |
| CDX88722 | Canola | nucleus | 18.99 | 26.45 |
| Zm00001d010933_P001 | Maize | nucleus | 28.78 | 26.43 |
| EES17207 | Sorghum | nucleus | 26.11 | 26.11 |
| CDY61190 | Canola | nucleus | 19.58 | 25.29 |
| Zm00001d024726_P001 | Maize | nucleus | 26.41 | 25.07 |
| CDX77436 | Canola | nucleus | 19.29 | 25.0 |
| CDY35782 | Canola | nucleus | 15.13 | 24.88 |
| CDX93006 | Canola | nucleus | 19.88 | 24.45 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 25.82 | 23.97 |
| CDX86354 | Canola | nucleus | 18.99 | 23.88 |
| CDY49231 | Canola | nucleus | 18.99 | 23.88 |
| CDX94829 | Canola | nucleus | 19.29 | 23.81 |
| CDY45895 | Canola | nucleus | 18.1 | 23.74 |
| CDY64694 | Canola | nucleus | 19.29 | 23.72 |
| Zm00001d024725_P001 | Maize | nucleus | 28.19 | 23.4 |
| CDX73572 | Canola | nucleus | 16.91 | 23.27 |
| CDX78153 | Canola | nucleus | 16.91 | 23.27 |
| CDX85285 | Canola | nucleus | 18.4 | 22.96 |
| CDY19978 | Canola | nucleus | 18.1 | 22.85 |
| CDX86040 | Canola | nucleus | 18.69 | 22.66 |
| CDX86041 | Canola | nucleus | 18.69 | 22.66 |
| CDX99125 | Canola | nucleus | 18.69 | 22.66 |
| KXG21220 | Sorghum | nucleus | 27.3 | 22.66 |
| CDY00083 | Canola | nucleus | 18.1 | 22.59 |
| CDX67561 | Canola | nucleus | 16.02 | 22.5 |
| CDY13311 | Canola | nucleus | 15.73 | 21.72 |
| CDY58600 | Canola | nucleus | 18.69 | 19.5 |
| KXG21221 | Sorghum | nucleus | 27.6 | 19.5 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078CBE4 | EnsemblPlants:CDX74100 | ProteinID:CDX74100 | ProteinID:CDX74100.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00111855001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF743 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TMHMM:TMhelix | UniParc:UPI0004EEF12D | SEG:seg |
Description
BnaA03g29470D
Coordinates
chrLK031800:-:1313010..1314778
Molecular Weight (calculated)
39602.9 Da
IEP (calculated)
5.604
GRAVY (calculated)
-0.393
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMIEHKVNT SIMLCNLSLG SFSQKDAHRS RTYIHIYIYI YIYIYIYMCM YVLLLCASFW LKEPKDKLHN IIDVFTLCSI IFMIQSRCVI VFFRLRWLNY
101: LRPDVCRGNI TLEEQLLILE LHSRWGNRWS KIAQYLPGRT DNEIKNYWRT RVQKHAKQLK CDVNSQQFKD TMKYMWMPRL VERIQSAAAS LTSTTGSATT
201: SSCITTSNNE FMTYDYNNNN FIGERLGVMN NNDYITPENS SVAVSPVSDL TDYYNAPKPN PDQNLVGPQM LPDNYFDYSG LLDEDLTATH EQSNLHWFEN
301: IDEVVSSSSE SLWNIGESDE DFWFCQQQQQ FNNNNDF
101: LRPDVCRGNI TLEEQLLILE LHSRWGNRWS KIAQYLPGRT DNEIKNYWRT RVQKHAKQLK CDVNSQQFKD TMKYMWMPRL VERIQSAAAS LTSTTGSATT
201: SSCITTSNNE FMTYDYNNNN FIGERLGVMN NNDYITPENS SVAVSPVSDL TDYYNAPKPN PDQNLVGPQM LPDNYFDYSG LLDEDLTATH EQSNLHWFEN
301: IDEVVSSSSE SLWNIGESDE DFWFCQQQQQ FNNNNDF
001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
Arabidopsis Description
MYB112MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94CJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.