Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1D01G078600.1 | Wheat | nucleus | 75.54 | 65.02 |
CDX85422 | Canola | nucleus | 37.41 | 56.83 |
CDX86220 | Canola | nucleus | 37.41 | 53.89 |
PGSC0003DMT400011750 | Potato | nucleus | 38.13 | 46.09 |
PGSC0003DMT400011745 | Potato | nucleus | 38.13 | 45.3 |
Solyc12g099130.1.1 | Tomato | nucleus | 37.77 | 44.68 |
Solyc12g099120.1.1 | Tomato | nucleus | 39.21 | 44.13 |
AT1G48000.1 | Thale cress | nucleus | 36.33 | 41.56 |
VIT_05s0077g00500.t01 | Wine grape | nucleus | 45.32 | 41.18 |
Solyc01g057910.2.1 | Tomato | nucleus | 42.45 | 41.12 |
PGSC0003DMT400022600 | Potato | nucleus | 42.09 | 39.39 |
TraesCS3D01G413700.1 | Wheat | nucleus | 41.37 | 39.25 |
Bra001202.1-P | Field mustard | nucleus | 42.09 | 38.49 |
TraesCS1D01G415000.1 | Wheat | nucleus | 31.3 | 38.16 |
TraesCS5D01G099100.1 | Wheat | nucleus | 38.13 | 38.13 |
TraesCS3D01G223700.1 | Wheat | nucleus | 29.14 | 37.85 |
TraesCS4D01G142900.1 | Wheat | nucleus | 39.21 | 37.2 |
Bra020624.1-P | Field mustard | nucleus | 42.45 | 37.11 |
CDY05611 | Canola | nucleus | 42.45 | 37.11 |
CDY33891 | Canola | nucleus | 42.45 | 37.11 |
PGSC0003DMT400011748 | Potato | nucleus | 39.21 | 36.95 |
CDY34949 | Canola | nucleus | 42.45 | 36.88 |
CDX99864 | Canola | nucleus | 42.45 | 36.88 |
AT5G49620.2 | Thale cress | nucleus | 42.45 | 36.76 |
TraesCS4D01G181100.1 | Wheat | nucleus | 42.09 | 36.68 |
CDY24688 | Canola | nucleus | 42.09 | 36.68 |
Solyc12g099140.1.1 | Tomato | nucleus | 39.57 | 36.67 |
Bra040274.1-P | Field mustard | nucleus | 42.09 | 36.56 |
Bra029582.1-P | Field mustard | nucleus | 42.09 | 36.34 |
CDY05270 | Canola | nucleus | 42.09 | 36.34 |
KRH02414 | Soybean | nucleus | 41.73 | 36.02 |
AT3G06490.1 | Thale cress | nucleus | 41.73 | 35.91 |
Bra010021.1-P | Field mustard | nucleus | 41.37 | 35.6 |
Bra010022.1-P | Field mustard | nucleus | 41.37 | 35.6 |
Solyc05g053330.2.1 | Tomato | nucleus | 40.65 | 35.53 |
KRH50671 | Soybean | nucleus | 41.01 | 35.08 |
PGSC0003DMT400069841 | Potato | nucleus | 39.93 | 34.26 |
KRH36928 | Soybean | nucleus | 40.65 | 33.24 |
KRG97314 | Soybean | nucleus | 40.65 | 33.14 |
GSMUA_Achr11P... | Banana | nucleus | 39.57 | 31.98 |
CDY70282 | Canola | nucleus | 33.45 | 31.63 |
TraesCS2D01G096000.1 | Wheat | nucleus | 36.69 | 31.1 |
TraesCS3D01G036200.1 | Wheat | nucleus | 36.33 | 29.36 |
TraesCS5D01G095600.1 | Wheat | nucleus | 24.1 | 28.27 |
TraesCS2D01G361600.1 | Wheat | nucleus | 25.18 | 27.24 |
TraesCS4D01G339100.1 | Wheat | nucleus | 24.1 | 27.13 |
TraesCS1D01G043300.1 | Wheat | nucleus | 24.46 | 26.77 |
CDX74100 | Canola | nucleus | 31.65 | 26.11 |
TraesCS6D01G207300.1 | Wheat | nucleus | 25.18 | 25.45 |
TraesCS4D01G142300.1 | Wheat | nucleus | 21.58 | 25.21 |
TraesCS3D01G540600.1 | Wheat | nucleus | 23.02 | 25.0 |
CDY58600 | Canola | nucleus | 21.22 | 18.27 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:IPR017930 |
InterPro:Myb-like_dom | InterPro:Myb_dom | PFAM:PF00249 | InterPro:PG/BPGM_mutase_AS | ScanProsite:PS00175 | PFscan:PS50090 |
PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF921 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
EnsemblPlantsGene:TraesCS3D01G014800 | EnsemblPlants:TraesCS3D01G014800.1 | TIGR:cd00167 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3D:+:5147067..5148084
Molecular Weight (calculated)
30651.9 Da
IEP (calculated)
6.901
GRAVY (calculated)
-0.403
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTGLAMNVL PMSPAGSSAV TTGDLRRGAW TAEEDLLLVD YISRHGEGRW NSLARCAGLR RTGKSCRLRW LNNLRPDVRR GHITPEEQLL ILDLHSRWGN
101: RWSKIIKNYW RTRVQKHARQ LGCDVNSDRF RQVVRLVWMP RLLERIQAES SSSAAAASEY VALPVAGESQ SYHCFNHASS ECWTAVVAMS PDTPSMPRSS
201: LSSTEASHGG HFPEWGSAAA TANIEGSMMH SCSGEGGAVG GDHHVFPGDK LNESWSELLA ASDVPGFEFG NFEDSLWA
101: RWSKIIKNYW RTRVQKHARQ LGCDVNSDRF RQVVRLVWMP RLLERIQAES SSSAAAASEY VALPVAGESQ SYHCFNHASS ECWTAVVAMS PDTPSMPRSS
201: LSSTEASHGG HFPEWGSAAA TANIEGSMMH SCSGEGGAVG GDHHVFPGDK LNESWSELLA ASDVPGFEFG NFEDSLWA
001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
Arabidopsis Description
MYB112MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94CJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.