Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85422 | Canola | nucleus | 46.42 | 81.42 |
| CDX86220 | Canola | nucleus | 46.11 | 76.68 |
| GSMUA_Achr4P19990_001 | Banana | nucleus | 30.22 | 75.78 |
| CDY05611 | Canola | nucleus | 71.96 | 72.64 |
| Bra020624.1-P | Field mustard | nucleus | 71.65 | 72.33 |
| CDY33891 | Canola | nucleus | 71.65 | 72.33 |
| GSMUA_Achr5P21090_001 | Banana | nucleus | 40.5 | 71.43 |
| Bra010022.1-P | Field mustard | nucleus | 71.34 | 70.9 |
| Bra010021.1-P | Field mustard | nucleus | 71.34 | 70.9 |
| AT3G06490.1 | Thale cress | nucleus | 66.67 | 66.25 |
| GSMUA_Achr3P12730_001 | Banana | nucleus | 31.78 | 58.29 |
| GSMUA_Achr11P... | Banana | nucleus | 45.17 | 55.34 |
| GSMUA_Achr8P10800_001 | Banana | nucleus | 43.93 | 55.08 |
| GSMUA_Achr11P... | Banana | nucleus | 43.93 | 53.41 |
| GSMUA_Achr9P16640_001 | Banana | nucleus | 42.37 | 52.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.3 | 52.06 |
| AT1G48000.1 | Thale cress | nucleus | 39.25 | 51.85 |
| GSMUA_Achr1P24960_001 | Banana | nucleus | 43.3 | 51.48 |
| KRH50671 | Soybean | nucleus | 52.02 | 51.38 |
| KRH02414 | Soybean | nucleus | 51.4 | 51.24 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.55 | 50.89 |
| GSMUA_Achr8P29910_001 | Banana | nucleus | 42.06 | 50.19 |
| KRH36928 | Soybean | nucleus | 52.96 | 50.0 |
| KRG97314 | Soybean | nucleus | 52.65 | 49.56 |
| AT3G01530.1 | Thale cress | nucleus | 30.22 | 47.09 |
| AT2G47190.1 | Thale cress | nucleus | 39.88 | 46.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.88 | 46.55 |
| TraesCSU01G069000.1 | Wheat | nucleus | 41.43 | 45.86 |
| TraesCS5B01G093000.1 | Wheat | nucleus | 39.56 | 45.68 |
| TraesCS5A01G087100.1 | Wheat | nucleus | 39.56 | 45.68 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 41.12 | 45.67 |
| AT3G27810.1 | Thale cress | nucleus | 32.09 | 45.58 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 39.25 | 45.32 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 41.12 | 45.05 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 39.25 | 44.68 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 44.24 | 44.51 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 44.24 | 44.51 |
| AT5G40350.1 | Thale cress | nucleus | 29.59 | 44.39 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 40.5 | 44.37 |
| TraesCS4B01G179500.1 | Wheat | nucleus | 43.3 | 43.71 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 39.88 | 43.69 |
| EES00624 | Sorghum | nucleus | 40.81 | 42.81 |
| GSMUA_Achr7P05570_001 | Banana | nucleus | 36.14 | 42.65 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 36.76 | 42.45 |
| Zm00001d028930_P001 | Maize | nucleus | 44.24 | 42.26 |
| TraesCS3B01G453300.1 | Wheat | nucleus | 39.88 | 41.69 |
| Zm00001d040594_P001 | Maize | nucleus | 39.25 | 41.58 |
| KXG39500 | Sorghum | nucleus | 43.3 | 41.37 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 41.43 | 41.05 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 41.12 | 40.87 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 41.12 | 40.62 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 38.94 | 40.58 |
| TraesCS1B01G094500.1 | Wheat | nucleus | 41.12 | 40.49 |
| GSMUA_Achr11P... | Banana | nucleus | 42.68 | 39.83 |
| AT1G68320.1 | Thale cress | nucleus | 34.58 | 38.81 |
| Zm00001d047579_P001 | Maize | nucleus | 42.06 | 38.68 |
| Zm00001d009066_P001 | Maize | nucleus | 38.32 | 38.68 |
| GSMUA_Achr3P08370_001 | Banana | nucleus | 34.58 | 38.68 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 39.56 | 38.37 |
| KXG36991 | Sorghum | nucleus | 40.5 | 38.01 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 43.61 | 37.94 |
| EES17207 | Sorghum | nucleus | 39.25 | 37.39 |
| Zm00001d007191_P001 | Maize | nucleus | 40.19 | 37.18 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 37.07 | 36.5 |
| Zm00001d030644_P001 | Maize | nucleus | 39.88 | 36.47 |
| EES10257 | Sorghum | nucleus | 41.12 | 36.16 |
| TraesCS2D01G096000.1 | Wheat | nucleus | 36.45 | 35.67 |
| TraesCS2B01G112600.1 | Wheat | nucleus | 36.76 | 35.54 |
| Zm00001d048647_P001 | Maize | nucleus | 38.32 | 34.94 |
| Zm00001d010933_P001 | Maize | nucleus | 39.56 | 34.6 |
| Zm00001d024726_P001 | Maize | nucleus | 37.69 | 34.08 |
| AT5G59780.3 | Thale cress | nucleus | 24.61 | 33.62 |
| AT3G24310.1 | Thale cress | nucleus | 28.04 | 33.46 |
| AT4G13480.1 | Thale cress | nucleus | 27.1 | 33.33 |
| AT1G25340.3 | Thale cress | nucleus | 31.78 | 33.12 |
| Os05t0132700-01 | Rice | nucleus | 22.12 | 33.02 |
| AT3G53200.1 | Thale cress | nucleus | 23.36 | 31.51 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 35.51 | 31.41 |
| KXG21220 | Sorghum | nucleus | 39.56 | 31.28 |
| AT3G46130.1 | Thale cress | nucleus | 24.61 | 30.62 |
| Zm00001d024725_P001 | Maize | nucleus | 38.32 | 30.3 |
| AT3G30210.1 | Thale cress | nucleus | 25.23 | 29.35 |
| KXG21221 | Sorghum | nucleus | 38.32 | 25.79 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:835024 | ProteinID:AED95837.1 | ArrayExpress:AT5G49620 | EnsemblPlantsGene:AT5G49620 |
| RefSeq:AT5G49620 | TAIR:AT5G49620 | RefSeq:AT5G49620-TAIR-G | EnsemblPlants:AT5G49620.2 | TAIR:AT5G49620.2 | Unigene:At.9662 |
| Symbol:AtMYB78 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | Symbol:MYB78 | InterPro:Myb_dom | RefSeq:NP_001190502.1 | PFAM:PF00249 | PO:PO:0009047 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF743 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0001E93111 | SEG:seg | : | : | : | : |
Description
AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
Coordinates
chr5:-:20137396..20139529
Molecular Weight (calculated)
37116.3 Da
IEP (calculated)
5.000
GRAVY (calculated)
-0.775
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NSNEFDHKFS SSCEDRWSKI AQYLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSQQFKDTM KYLWMPRLVE RIQAASIGSV SMSSCVTTSS DQFVINNNNT
201: NNVDNLALMS NPNGYITPDN SSVAVSPVSD LTECQVSSEV WKIGQDENLV DPKMTSPNYM DNSSGLLNGD FTKMQDQSDL NWFENINGMV PNYSDSFWNI
301: GNDEDFWLLQ QHQQVHDNGS F
101: NSNEFDHKFS SSCEDRWSKI AQYLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSQQFKDTM KYLWMPRLVE RIQAASIGSV SMSSCVTTSS DQFVINNNNT
201: NNVDNLALMS NPNGYITPDN SSVAVSPVSD LTECQVSSEV WKIGQDENLV DPKMTSPNYM DNSSGLLNGD FTKMQDQSDL NWFENINGMV PNYSDSFWNI
301: GNDEDFWLLQ QHQQVHDNGS F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.