Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20036 | Canola | nucleus | 92.48 | 90.09 |
| Bra039067.1-P | Field mustard | nucleus | 92.04 | 89.66 |
| CDX86471 | Canola | nucleus | 91.15 | 88.79 |
| CDY44433 | Canola | nucleus | 90.71 | 88.36 |
| Bra025300.1-P | Field mustard | nucleus | 90.71 | 88.36 |
| KRG94092 | Soybean | nucleus | 34.07 | 86.52 |
| Solyc02g067760.2.1 | Tomato | nucleus | 60.18 | 69.74 |
| KRH07188 | Soybean | nucleus | 62.83 | 68.27 |
| VIT_14s0066g01090.t01 | Wine grape | nucleus | 57.08 | 68.25 |
| KRG94086 | Soybean | nucleus | 61.5 | 67.48 |
| KRH56587 | Soybean | nucleus | 60.62 | 66.5 |
| KRG93265 | Soybean | nucleus | 59.29 | 65.37 |
| AT5G40350.1 | Thale cress | nucleus | 61.5 | 64.95 |
| PGSC0003DMT400001278 | Potato | nucleus | 58.41 | 63.77 |
| GSMUA_Achr6P27290_001 | Banana | nucleus | 48.67 | 56.41 |
| GSMUA_Achr1P27270_001 | Banana | nucleus | 48.67 | 56.12 |
| AT3G01530.1 | Thale cress | nucleus | 47.35 | 51.94 |
| TraesCS1D01G415000.1 | Wheat | nucleus | 43.81 | 43.42 |
| HORVU3Hr1G056980.1 | Barley | nucleus | 38.5 | 41.04 |
| TraesCS3A01G229500.1 | Wheat | nucleus | 37.61 | 40.48 |
| TraesCS3B01G258800.1 | Wheat | nucleus | 38.05 | 40.38 |
| TraesCS3D01G223700.1 | Wheat | nucleus | 38.05 | 40.19 |
| TraesCS1A01G406600.1 | Wheat | mitochondrion | 44.25 | 40.16 |
| TraesCS1B01G436800.1 | Wheat | nucleus | 31.86 | 38.1 |
| AT1G48000.1 | Thale cress | nucleus | 39.38 | 36.63 |
| Zm00001d044107_P001 | Maize | nucleus | 42.48 | 36.36 |
| AT2G47190.1 | Thale cress | nucleus | 41.59 | 34.43 |
| HORVU1Hr1G089770.2 | Barley | nucleus | 44.25 | 34.13 |
| AT1G68320.1 | Thale cress | nucleus | 41.59 | 32.87 |
| AT5G49620.2 | Thale cress | nucleus | 45.58 | 32.09 |
| EES01143 | Sorghum | nucleus | 41.59 | 32.08 |
| Os01t0637800-00 | Rice | mitochondrion, nucleus, plastid | 39.38 | 32.01 |
| AT4G13480.1 | Thale cress | nucleus | 36.73 | 31.8 |
| AT5G59780.3 | Thale cress | nucleus | 32.3 | 31.06 |
| AT3G24310.1 | Thale cress | nucleus | 36.28 | 30.48 |
| AT3G06490.1 | Thale cress | nucleus | 42.48 | 29.72 |
| AT1G25340.3 | Thale cress | nucleus | 40.27 | 29.55 |
| AT3G46130.1 | Thale cress | nucleus | 33.19 | 29.07 |
| AT3G53200.1 | Thale cress | nucleus | 30.09 | 28.57 |
| AT3G30210.1 | Thale cress | nucleus | 31.86 | 26.09 |
| GSMUA_Achr9P07000_001 | Banana | nucleus | 46.9 | 8.43 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:822401 | UniProt:A0A178VHJ7 | EMBL:AB005888 | EMBL:AB493635 |
| ProteinID:AEE77366.1 | EMBL:AF062870 | EMBL:AK118439 | ArrayExpress:AT3G27810 | EnsemblPlantsGene:AT3G27810 | RefSeq:AT3G27810 |
| TAIR:AT3G27810 | RefSeq:AT3G27810-TAIR-G | EnsemblPlants:AT3G27810.1 | TAIR:AT3G27810.1 | Symbol:ATMYB21 | EMBL:AY519589 |
| ProteinID:BAB02527.1 | GO:GO:0000003 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009740 | GO:GO:0009753 |
| GO:GO:0009791 | GO:GO:0009867 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010017 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | GO:GO:0048443 | GO:GO:0080086 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | RefSeq:NP_189418.2 | ProteinID:OAP04795.1 | PFAM:PF00249 | PO:PO:0000293 | PO:PO:0001185 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0009062 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF531 | UniProt:Q9LK95 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI00000AC5CB | SEG:seg | : | : | : |
Description
MYB21Transcription factor MYB21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK95]
Coordinates
chr3:+:10305849..10310492
Molecular Weight (calculated)
25352.4 Da
IEP (calculated)
6.961
GRAVY (calculated)
-0.747
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKRGGGSSG GSGSSAEAEV RKGPWTMEED LILINYIANH GDGVWNSLAK SAGLKRTGKS CRLRWLNYLR PDVRRGNITP EEQLIIMELH AKWGNRWSKI
101: AKHLPGRTDN EIKNFWRTRI QKYIKQSDVT TTSSVGSHHS SEINDQAAST SSHNVFCTQD QAMETYSPTP TSYQHTNMEF NYGNYSAAAV TATVDYPVPM
201: TVDDQTGENY WGMDDIWSSM HLLNGN
101: AKHLPGRTDN EIKNFWRTRI QKYIKQSDVT TTSSVGSHHS SEINDQAAST SSHNVFCTQD QAMETYSPTP TSYQHTNMEF NYGNYSAAAV TATVDYPVPM
201: TVDDQTGENY WGMDDIWSSM HLLNGN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.