Factsheet for VIT_14s0066g01090.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94092	Soybean	nucleus	41.8	88.76
Solyc02g086690.2.1	Tomato	nucleus	43.39	87.23
KRH07188	Soybean	nucleus	78.84	71.63
KRG94086	Soybean	nucleus	77.25	70.87
KRH56587	Soybean	nucleus	75.13	68.93
KRG93265	Soybean	nucleus	74.6	68.78
PGSC0003DMT400001278	Potato	nucleus	71.43	65.22
AT5G40350.1	Thale cress	nucleus	69.84	61.68
GSMUA_Achr1P27270_001	Banana	nucleus	60.85	58.67
GSMUA_Achr6P27290_001	Banana	nucleus	59.26	57.44
AT3G27810.1	Thale cress	nucleus	68.25	57.08
Bra025300.1-P	Field mustard	nucleus	69.31	56.47
CDX86471	Canola	nucleus	69.31	56.47
CDY44433	Canola	nucleus	69.31	56.47
Bra039067.1-P	Field mustard	nucleus	68.25	55.6
CDY20036	Canola	nucleus	68.25	55.6
VIT_08s0007g04830.t01	Wine grape	nucleus	33.86	52.03
TraesCS1D01G415000.1	Wheat	nucleus	51.32	42.54
HORVU3Hr1G056980.1	Barley	nucleus	46.56	41.51
TraesCS3D01G223700.1	Wheat	nucleus	45.5	40.19
TraesCS1A01G406600.1	Wheat	mitochondrion	52.91	40.16
TraesCS3A01G229500.1	Wheat	nucleus	44.44	40.0
TraesCS3B01G258800.1	Wheat	nucleus	44.97	39.91
TraesCS1B01G436800.1	Wheat	nucleus	37.04	37.04
VIT_05s0077g00500.t01	Wine grape	nucleus	55.03	33.99
VIT_07s0005g01950.t01	Wine grape	nucleus	48.68	33.82
Zm00001d044107_P001	Maize	nucleus	47.09	33.71
HORVU1Hr1G089770.2	Barley	nucleus	51.85	33.45
Os01t0637800-00	Rice	mitochondrion, nucleus, plastid	48.68	33.09
VIT_01s0011g03730.t01	Wine grape	nucleus	48.15	31.6
EES01143	Sorghum	nucleus	48.15	31.06
VIT_05s0049g02260.t01	Wine grape	nucleus	40.74	30.08
VIT_14s0083g01060.t01	Wine grape	nucleus	37.04	28.34
VIT_06s0004g04140.t01	Wine grape	nucleus	37.04	27.34
VIT_17s0000g03560.t01	Wine grape	nucleus	47.09	27.13
GSMUA_Achr9P07000_001	Banana	nucleus	53.97	8.11

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100233097	wikigene:100233097	MapMan:15.5.2.1	UniProt:A5BNW7	ProteinID:ABC54957
ProteinID:ABC54957.1	ProteinID:ABC54966	ProteinID:ABC54966.1	ProteinID:ABC54967	ProteinID:ABC54967.1	ProteinID:ABC54969
ProteinID:ABC54969.1	ProteinID:ABC54973	ProteinID:ABC54973.1	ProteinID:ABC54978	ProteinID:ABC54978.1	ProteinID:ABC54983
ProteinID:ABC54983.1	ProteinID:ABC54984	ProteinID:ABC54984.1	ProteinID:ABC54985	ProteinID:ABC54985.1	ProteinID:ABC54986
ProteinID:ABC54986.1	ProteinID:ABC54990	ProteinID:ABC54990.1	ProteinID:ABW34394	ProteinID:ABW34394.1	EMBL:AM466081
ProteinID:CAN77103	ProteinID:CAN77103.1	ProteinID:CBI34905	ProteinID:CBI34905.3	EMBL:DQ277649	EMBL:DQ277659
EMBL:DQ277661	EMBL:DQ277663	EMBL:DQ277667	EMBL:DQ277672	EMBL:DQ277677	EMBL:DQ277678
EMBL:DQ277679	EMBL:DQ277680	EMBL:DQ277685	EMBL:EU181426	EMBL:FN596252	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:MYB24	wikigene:MYB24	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF531	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGR:TC59409	UniParc:UPI0001521591	ArrayExpress:VIT_14s0066g01090	EnsemblPlantsGene:VIT_14s0066g01090	EnsemblPlants:VIT_14s0066g01090.t01
unigene:Vvi.9027	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:27556538..27560404

Molecular Weight (calculated)

21570.2 Da

IEP (calculated)

7.145

GRAVY (calculated)

-0.841

Length

189 amino acids

Sequence
(BLAST)

001: MDKKPCNSQD AEVRKGPWTL EEDLILINYI ANHGEGVWNS LAKSAGLKRT GKSCRLRWLN YLRPDVRRGN ITDEEQQLIM ELHAKWGNRW SKIAKHLPGR
101: TDNEIKNFWR TRIQKHIKNA ETFTAQSSDQ THDQATTSQV MGAAHVADSY SPPSYPANLE AFPGPSSAES NDNFWTMEDI WSMQLLNGD

Best Arabidopsis Sequence Match ( AT5G40350.1 )
(BLAST)

001: MEKRESSGGS GSGDAEVRKG PWTMEEDLIL INYIANHGEG VWNSLAKSAG LKRTGKSCRL RWLNYLRPDV RRGNITPEEQ LTIMELHAKW GNRWSKIAKH
101: LPGRTDNEIK NFWRTKIQKY IIKSGETTTV GSQSSEFINH HATTSHVMND TQETMDMYSP TTSYQHASNI NQQLNYGNYV PESGSIMMPL SVDQSEQNYW
201: SVDDLWPMNI YNGN

Arabidopsis Description

MYB24Transcription factor MYB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SPG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.