Factsheet for VIT_08s0007g04830.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008390.1.1	Tomato	nucleus	64.23	60.31
PGSC0003DMT400072687	Potato	nucleus	66.67	60.29
Solyc10g083900.1.1	Tomato	nucleus	65.04	40.0
KRH19953	Soybean	nucleus	71.54	38.43
KRH32555	Soybean	nucleus	69.92	37.07
Bra028550.1-P	Field mustard	nucleus	70.73	36.25
CDX67561	Canola	nucleus	69.92	35.83
AT3G53200.1	Thale cress	nucleus	69.11	35.71
Bra006977.1-P	Field mustard	nucleus	70.73	35.51
CDX78153	Canola	nucleus	70.73	35.51
CDY13311	Canola	nucleus	69.92	35.25
CDX73572	Canola	nucleus	69.92	35.1
VIT_14s0066g01090.t01	Wine grape	nucleus	52.03	33.86
VIT_05s0049g02260.t01	Wine grape	nucleus	61.79	29.69
VIT_14s0083g01060.t01	Wine grape	nucleus	58.54	29.15
VIT_06s0004g04140.t01	Wine grape	nucleus	59.35	28.52
VIT_07s0005g01950.t01	Wine grape	nucleus	53.66	24.26
VIT_05s0077g00500.t01	Wine grape	nucleus	55.28	22.22
VIT_01s0011g03730.t01	Wine grape	nucleus	49.59	21.18
VIT_17s0000g03560.t01	Wine grape	nucleus	51.22	19.21

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100262377	wikigene:100262377	MapMan:15.5.2.1	EMBL:AM456538	ProteinID:CAN81060
ProteinID:CAN81060.1	ProteinID:CBI30159	ProteinID:CBI30159.3	UniProt:D7TIT3	EMBL:FN595991	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100262377	wikigene:LOC100262377	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF636	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00015CCFC2	ArrayExpress:VIT_08s0007g04830	EnsemblPlantsGene:VIT_08s0007g04830	EnsemblPlants:VIT_08s0007g04830.t01	RefSeq:XP_002265893
RefSeq:XP_002265893.2	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:18790207..18790780

Molecular Weight (calculated)

14668.5 Da

IEP (calculated)

10.458

GRAVY (calculated)

-0.924

Length

123 amino acids

Sequence
(BLAST)

001: MQGENLRKGS WLEEEDERLT AFVGLLGERR WDSIARASGL KRSGKSCRLR WLNYLRPDLK RCQISAEEEQ IILQLHKRWG NKWSWIARSL PGRTDNEIKN
101: YWRTHLRKRT EIEEQGILQF SAS

Best Arabidopsis Sequence Match ( AT3G53200.1 )
(BLAST)

001: MDFKKEETLR RGPWLEEEDE RLVKVISLLG ERRWDSLAIV SGLKRSGKSC RLRWMNYLNP TLKRGPMSQE EERIIFQLHA LWGNKWSKIA RRLPGRTDNE
101: IKNYWRTHYR KKQEAQNYGK LFEWRGNTGE ELLHKYKETE ITRTKTTSQE HGFVEVVSME SGKEANGGVG GRESFGVMKS PYENRISDWI SEISTDQSEA
201: NLSEDHSSNS CSENNINIGT WWFQETRDFE EFSCSLWS

Arabidopsis Description

MYB27Transcription factor MYB27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.