Factsheet for VIT_14s0083g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g04830.t01	Wine grape	nucleus	29.15	58.54
PGSC0003DMT400003479	Potato	nucleus	54.66	56.72
Solyc02g089190.1.1	Tomato	nucleus	53.44	55.23
GSMUA_Achr4P29230_001	Banana	nucleus	40.08	48.53
GSMUA_Achr11P...	Banana	nucleus	41.7	48.36
CDX85285	Canola	nucleus	51.82	47.41
Bra025410.1-P	Field mustard	nucleus	51.42	47.39
CDX86354	Canola	nucleus	51.42	47.39
Bra036202.1-P	Field mustard	nucleus	51.01	47.19
CDY19978	Canola	nucleus	51.01	47.19
AT3G30210.1	Thale cress	nucleus	52.63	47.1
CDY00083	Canola	nucleus	50.61	46.3
KRH01379	Soybean	nucleus	48.18	46.12
Bra020744.1-P	Field mustard	nucleus	47.77	45.91
CDY45895	Canola	nucleus	47.77	45.91
VIT_05s0049g02260.t01	Wine grape	nucleus	47.37	45.7
GSMUA_Achr11P...	Banana	nucleus	42.11	45.22
KRH45095	Soybean	nucleus	49.8	44.73
GSMUA_Achr8P12710_001	Banana	nucleus	41.3	44.16
HORVU0Hr1G005100.1	Barley	nucleus	39.27	43.11
GSMUA_Achr1P03450_001	Banana	nucleus	42.11	42.8
Zm00001d048383_P001	Maize	nucleus	39.68	42.24
KRH01378	Soybean	nucleus	47.37	41.94
Os03t0142600-00	Rice	nucleus	41.3	41.3
EER92876	Sorghum	nucleus	41.7	40.71
TraesCS2A01G363800.1	Wheat	nucleus	42.51	40.38
TraesCS2B01G381800.1	Wheat	nucleus	42.11	40.31
Zm00001d027623_P001	Maize	nucleus	40.49	40.16
HORVU6Hr1G057670.3	Barley	nucleus	43.72	40.0
HORVU2Hr1G087990.1	Barley	nucleus	41.7	39.77
TraesCS2D01G361600.1	Wheat	nucleus	41.3	39.69
Os02t0618400-02	Rice	nucleus	46.15	39.45
TraesCS6A01G227700.1	Wheat	nucleus	43.72	39.42
TraesCS5A01G512700.1	Wheat	nucleus	39.27	39.11
TraesCS6B01G254200.1	Wheat	nucleus	43.32	39.05
CDY35782	Canola	nucleus	32.39	39.02
TraesCS4D01G339100.1	Wheat	nucleus	38.87	38.87
Zm00001d017243_P001	Maize	nucleus	44.13	38.79
KXG26684	Sorghum	nucleus	44.13	38.65
TraesCS4B01G344000.1	Wheat	nucleus	38.46	38.62
TraesCS6D01G207300.1	Wheat	nucleus	42.91	38.55
EES07157	Sorghum	nucleus	44.94	38.54
Zm00001d025823_P001	Maize	nucleus	43.32	38.49
Os04t0508500-01	Rice	nucleus	43.32	38.08
VIT_14s0066g01090.t01	Wine grape	nucleus	28.34	37.04
HORVU4Hr1G084360.3	Barley	nucleus	38.87	35.69
Zm00001d051117_P001	Maize	nucleus	36.03	31.9
VIT_06s0004g04140.t01	Wine grape	nucleus	31.98	30.86
VIT_07s0005g01950.t01	Wine grape	nucleus	31.17	28.31
VIT_01s0011g03730.t01	Wine grape	nucleus	31.98	27.43
VIT_05s0077g00500.t01	Wine grape	nucleus	33.6	27.12
VIT_17s0000g03560.t01	Wine grape	nucleus	33.2	25.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100248088	wikigene:100248088	MapMan:15.5.2.1	ProteinID:CBI16937	ProteinID:CBI16937.3
UniProt:D7SMN9	EMBL:FN594955	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100248088	wikigene:LOC100248088	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF572	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015C8ED0	ArrayExpress:VIT_14s0083g01060
EnsemblPlantsGene:VIT_14s0083g01060	EnsemblPlants:VIT_14s0083g01060.t01	RefSeq:XP_002278098	RefSeq:XP_002278098.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:23384136..23385107

Molecular Weight (calculated)

28373.4 Da

IEP (calculated)

6.717

GRAVY (calculated)

-0.885

Length

247 amino acids

Sequence
(BLAST)

001: MVGLMGWGSV PVQGWRKGPW TPEEDKLLSE YVSSHGEGRW SSVARCSGLN RSGKSCRLRW VNYLRPGLKR GHITTMEEGI IIELHALWGN KWSTIARYLP
101: GRTDNEIKNY WRTHFKKNQK QQKPKAQQPL EPKLQQQQQQ QQEDHEIKLE NGKMGEAQGK QEAISMEDQC LPVMYQEIDD HQARQQVASM YPTILEDLCL
201: PVTYQDHLQG EDQGLWGGLW NLDDTIDHTI SGGGNSSQNY YNGGYIF

Best Arabidopsis Sequence Match ( AT3G30210.1 )
(BLAST)

001: MLDWGVQGHH QKHDHDIYQQ QHQQQGCRKG PWTLEEDKLL AEYVTSHGEG RWSTVAKCAG LNRSGKSCRL RWVNYLRPGL KRGQITPQEE GIILELHSLW
101: GNKWSTIARY LPGRTDNEIK NYWRTHYKKN QKSSSKQDKV KKSLSRKQQQ VDLKPQPQAQ SENHQSQLVS QDHMNIDNDH NIASSLYYPT SVFDDKLYMP
201: QSVATTSSDH SMIDEGHLWG SLWNLDEDDP HSFGGGSGQG TAADIDEKFP DSGIEAPSCG SGDYSYTGVY MGGYIF

Arabidopsis Description

ATMYB121MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LRU5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.