Factsheet for VIT_01s0011g03730.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58599	Canola	nucleus	23.96	65.09
VIT_08s0007g04830.t01	Wine grape	nucleus	21.18	49.59
KRG90844	Soybean	nucleus	51.74	48.53
VIT_14s0066g01090.t01	Wine grape	nucleus	31.6	48.15
KRH35934	Soybean	nucleus	50.69	47.4
Solyc05g009230.1.1	Tomato	nucleus	44.79	47.08
PGSC0003DMT400037716	Potato	nucleus	44.44	46.89
CDY69488	Canola	nucleus	44.1	45.85
AT1G68320.1	Thale cress	nucleus	45.49	45.8
Bra004041.1-P	Field mustard	nucleus	44.44	45.39
CDY69953	Canola	nucleus	44.44	45.39
CDY12705	Canola	nucleus	44.79	45.26
CDX96033	Canola	nucleus	44.44	45.07
Bra004297.1-P	Field mustard	nucleus	44.44	45.07
CDY01906	Canola	nucleus	44.44	44.91
CDY54094	Canola	nucleus	44.44	44.91
Bra033948.1-P	Field mustard	nucleus	44.44	44.91
CDY42115	Canola	nucleus	42.36	44.04
Bra012482.1-P	Field mustard	nucleus	43.4	44.01
CDY03859	Canola	nucleus	43.06	43.21
Bra024760.1-P	Field mustard	nucleus	39.58	42.86
CDX84981	Canola	nucleus	42.71	42.71
VIT_07s0005g01950.t01	Wine grape	nucleus	38.89	41.18
VIT_17s0000g03560.t01	Wine grape	nucleus	46.18	40.55
VIT_05s0077g00500.t01	Wine grape	nucleus	40.28	37.91
AT1G25340.3	Thale cress	nucleus	39.58	37.01
VIT_05s0049g02260.t01	Wine grape	nucleus	29.51	33.2
VIT_14s0083g01060.t01	Wine grape	nucleus	27.43	31.98
VIT_06s0004g04140.t01	Wine grape	nucleus	26.74	30.08

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100259502	wikigene:100259502	MapMan:15.5.2.1	EMBL:AM447422	ProteinID:CAN76459
ProteinID:CAN76459.1	ProteinID:CCB50901	ProteinID:CCB50901.1	UniProt:F6HFN5	EMBL:FN595752	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100259502	wikigene:LOC100259502	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF510	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00015C7F4B	ArrayExpress:VIT_01s0011g03730	EnsemblPlantsGene:VIT_01s0011g03730	EnsemblPlants:VIT_01s0011g03730.t01	RefSeq:XP_002279433
RefSeq:XP_002279433.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:3375041..3376409

Molecular Weight (calculated)

32677.6 Da

IEP (calculated)

8.318

GRAVY (calculated)

-0.559

Length

288 amino acids

Sequence
(BLAST)

001: MATVAKRINN SSEEIELRRG PWTLEEDTLL IHYIACHGEG RWNLLAKCAG LKRTGKSCRL RWLNYLKPDI KRGNLTPQEQ LLILELHSKW GNRWSRIAQH
101: LPGRTDNEIK NYWRTRVQKQ ARQLKIESDS KRFIDAVRRF WMPRLLQKME QASTSSTAAD TVTTNTTNTT TVNSQSSTIP ALLPNQITVS SSPPQSSVTS
201: PSISTSDSMK IPLLPEISEH PTSPSQAIGN TVHNNPVIND CSYVDSSVYD MEPLAPSSAI GTYDFSLFSD YQMAENDWID LWNVDKLW

Best Arabidopsis Sequence Match ( AT1G68320.1 )
(BLAST)

001: MENSMKKKKS FKESEDEELR RGPWTLEEDT LLTNYILHNG EGRWNHVAKC AGLKRTGKSC RLRWLNYLKP DIRRGNLTPQ EQLLILELHS KWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTT YCCPQNNNNN SLLLPSQSHD SLSMQKDIDY SGFSNIDGSS
201: STSTCMSHLT TVPHFMDQSN TNIIDGSMCF HEGNVQEFGG YVPGMEDYMV NSDISMECHV ADGYSAYEDV TQDPMWNVDD IWQFRE

Arabidopsis Description

MYB62Transcription factor MYB62 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9G7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.