Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96033 | Canola | nucleus | 96.84 | 97.18 |
| Bra004297.1-P | Field mustard | nucleus | 96.49 | 96.83 |
| CDY69488 | Canola | nucleus | 84.56 | 87.0 |
| CDY69953 | Canola | nucleus | 85.26 | 86.17 |
| CDY12705 | Canola | nucleus | 83.86 | 83.86 |
| CDY54094 | Canola | nucleus | 83.51 | 83.51 |
| AT1G68320.1 | Thale cress | nucleus | 81.75 | 81.47 |
| GSMUA_Achr3P01370_001 | Banana | nucleus | 32.63 | 75.0 |
| CDY58599 | Canola | nucleus | 25.61 | 68.87 |
| GSMUA_Achr10P... | Banana | nucleus | 36.14 | 58.86 |
| CDY42115 | Canola | nucleus | 57.19 | 58.84 |
| CDY03859 | Canola | nucleus | 58.95 | 58.54 |
| CDX84981 | Canola | nucleus | 57.89 | 57.29 |
| CDX85422 | Canola | nucleus | 36.49 | 56.83 |
| CDX86220 | Canola | nucleus | 36.49 | 53.89 |
| GSMUA_Achr1P21020_001 | Banana | nucleus | 36.49 | 53.33 |
| GSMUA_Achr8P18460_001 | Banana | nucleus | 40.7 | 46.59 |
| Solyc03g119370.1.1 | Tomato | nucleus | 44.91 | 45.71 |
| PGSC0003DMT400014383 | Potato | nucleus | 44.21 | 45.32 |
| VIT_01s0011g03730.t01 | Wine grape | nucleus | 44.91 | 44.44 |
| KRG90844 | Soybean | nucleus | 47.72 | 44.3 |
| CDY00146 | Canola | nucleus | 25.61 | 43.98 |
| CDY37512 | Canola | nucleus | 30.53 | 43.28 |
| KRH35934 | Soybean | nucleus | 46.67 | 43.18 |
| CDY49063 | Canola | nucleus | 30.53 | 42.03 |
| CDX95420 | Canola | nucleus | 33.33 | 40.95 |
| GSMUA_Achr3P21060_001 | Banana | nucleus | 42.81 | 40.26 |
| GSMUA_Achr6P09760_001 | Banana | nucleus | 43.51 | 40.26 |
| CDX91944 | Canola | nucleus | 29.12 | 40.1 |
| CDY20036 | Canola | nucleus | 32.63 | 40.09 |
| CDX74303 | Canola | nucleus | 29.12 | 39.9 |
| GSMUA_Achr2P22640_001 | Banana | nucleus | 40.7 | 39.73 |
| CDX86471 | Canola | nucleus | 32.28 | 39.66 |
| CDY44433 | Canola | nucleus | 32.28 | 39.66 |
| GSMUA_Achr11P... | Banana | nucleus | 41.75 | 37.78 |
| CDY27504 | Canola | nucleus | 35.09 | 36.76 |
| Os01t0128000-01 | Rice | nucleus | 44.21 | 36.0 |
| TraesCS3D01G036200.1 | Wheat | nucleus | 43.16 | 35.76 |
| TraesCS3A01G044700.1 | Wheat | nucleus | 43.16 | 35.55 |
| Zm00001d040019_P001 | Maize | nucleus | 44.56 | 35.08 |
| TraesCS3B01G039100.1 | Wheat | nucleus | 43.16 | 35.04 |
| HORVU3Hr1G004050.1 | Barley | nucleus | 43.16 | 35.04 |
| Zm00001d008528_P001 | Maize | nucleus | 44.21 | 34.81 |
| CDY58600 | Canola | nucleus | 39.3 | 34.67 |
| CDX80085 | Canola | nucleus | 24.21 | 34.67 |
| CDY33891 | Canola | nucleus | 38.6 | 34.59 |
| CDY05611 | Canola | nucleus | 38.6 | 34.59 |
| CDY24688 | Canola | nucleus | 38.6 | 34.48 |
| CDY05270 | Canola | nucleus | 38.95 | 34.47 |
| CDY34949 | Canola | nucleus | 38.25 | 34.06 |
| CDX99864 | Canola | nucleus | 38.25 | 34.06 |
| CDY70097 | Canola | nucleus | 28.07 | 33.9 |
| CDY49581 | Canola | nucleus | 28.07 | 33.76 |
| CDX80230 | Canola | nucleus | 27.72 | 33.33 |
| CDX71075 | Canola | nucleus | 27.72 | 32.78 |
| CDX77436 | Canola | nucleus | 29.82 | 32.69 |
| CDX88722 | Canola | nucleus | 27.72 | 32.64 |
| EES00381 | Sorghum | nucleus | 44.21 | 32.39 |
| CDY61190 | Canola | nucleus | 29.12 | 31.8 |
| CDY49231 | Canola | nucleus | 29.82 | 31.72 |
| CDX94829 | Canola | nucleus | 29.82 | 31.14 |
| CDX93006 | Canola | nucleus | 29.82 | 31.02 |
| CDY45895 | Canola | nucleus | 27.72 | 30.74 |
| CDY64694 | Canola | nucleus | 29.47 | 30.66 |
| CDY70282 | Canola | nucleus | 31.58 | 30.61 |
| CDX99125 | Canola | nucleus | 29.12 | 29.86 |
| CDX86041 | Canola | nucleus | 29.12 | 29.86 |
| CDX86040 | Canola | nucleus | 28.77 | 29.5 |
| CDX86354 | Canola | nucleus | 27.72 | 29.48 |
| CDX85285 | Canola | nucleus | 27.72 | 29.26 |
| CDY00083 | Canola | nucleus | 27.37 | 28.89 |
| CDY19978 | Canola | nucleus | 27.02 | 28.84 |
| CDX73572 | Canola | nucleus | 23.16 | 26.94 |
| CDY13311 | Canola | nucleus | 22.81 | 26.64 |
| CDX78153 | Canola | nucleus | 22.81 | 26.53 |
| CDX67561 | Canola | nucleus | 22.11 | 26.25 |
| CDX74100 | Canola | nucleus | 29.82 | 25.22 |
| CDY35782 | Canola | nucleus | 16.49 | 22.93 |
| CDX86221 | Canola | nucleus | 2.81 | 11.43 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078EL78 | UniProt:A0A078EL78 | EnsemblPlants:CDY01906 | ProteinID:CDY01906 |
| ProteinID:CDY01906.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00113102001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF510 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EC7CF3 | SEG:seg |
Description
BnaC06g29460DBnaC06g29460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EL78]
Coordinates
chrLK031929:+:1117177..1118225
Molecular Weight (calculated)
33174.7 Da
IEP (calculated)
4.951
GRAVY (calculated)
-0.871
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSMKNKSF KESEEAKLRR GPWTLEEDTL LTTYILHNGE GRWNLAAKCA GLKRTGKSCR LRWLNYLKPD IRRGNLTPQE QLLILELHSK WGNRWSKIAQ
101: YLPGRTDNEI KNYWRTRVQK QARQLNIESN SDKFFDAVRS FWVPRLIEKM EQNSSTTYAC PQNNNNNNNN NSSLLPPSQT FESMSTQTYQ DLSGLSNMDG
201: SSSSSAFMPD LMTVPHFMDP NTIIDGSMCY HEDNAQELSG YILGTEEYYY MENSDISTEC QVAEAYENVT QDPMWNMDDI WQFRE
101: YLPGRTDNEI KNYWRTRVQK QARQLNIESN SDKFFDAVRS FWVPRLIEKM EQNSSTTYAC PQNNNNNNNN NSSLLPPSQT FESMSTQTYQ DLSGLSNMDG
201: SSSSSAFMPD LMTVPHFMDP NTIIDGSMCY HEDNAQELSG YILGTEEYYY MENSDISTEC QVAEAYENVT QDPMWNMDDI WQFRE
001: MENSMKKKKS FKESEDEELR RGPWTLEEDT LLTNYILHNG EGRWNHVAKC AGLKRTGKSC RLRWLNYLKP DIRRGNLTPQ EQLLILELHS KWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTT YCCPQNNNNN SLLLPSQSHD SLSMQKDIDY SGFSNIDGSS
201: STSTCMSHLT TVPHFMDQSN TNIIDGSMCF HEGNVQEFGG YVPGMEDYMV NSDISMECHV ADGYSAYEDV TQDPMWNVDD IWQFRE
101: QYLPGRTDNE IKNYWRTRVQ KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTT YCCPQNNNNN SLLLPSQSHD SLSMQKDIDY SGFSNIDGSS
201: STSTCMSHLT TVPHFMDQSN TNIIDGSMCF HEGNVQEFGG YVPGMEDYMV NSDISMECHV ADGYSAYEDV TQDPMWNVDD IWQFRE
Arabidopsis Description
MYB62Transcription factor MYB62 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9G7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.