Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69488 | Canola | nucleus | 80.77 | 83.39 |
| CDY69953 | Canola | nucleus | 82.17 | 83.33 |
| Bra004041.1-P | Field mustard | nucleus | 81.47 | 82.62 |
| Bra033948.1-P | Field mustard | nucleus | 82.17 | 82.46 |
| CDY12705 | Canola | nucleus | 81.82 | 82.11 |
| CDY01906 | Canola | nucleus | 81.47 | 81.75 |
| CDY54094 | Canola | nucleus | 81.47 | 81.75 |
| CDX96033 | Canola | nucleus | 80.77 | 81.34 |
| Bra004297.1-P | Field mustard | nucleus | 80.77 | 81.34 |
| GSMUA_Achr3P01370_001 | Banana | nucleus | 32.52 | 75.0 |
| GSMUA_Achr10P... | Banana | nucleus | 36.36 | 59.43 |
| AT1G25340.3 | Thale cress | nucleus | 58.74 | 54.55 |
| GSMUA_Achr1P21020_001 | Banana | nucleus | 35.31 | 51.79 |
| GSMUA_Achr8P18460_001 | Banana | nucleus | 40.21 | 46.18 |
| VIT_01s0011g03730.t01 | Wine grape | nucleus | 45.8 | 45.49 |
| Solyc03g119370.1.1 | Tomato | nucleus | 44.41 | 45.36 |
| PGSC0003DMT400014383 | Potato | nucleus | 43.71 | 44.96 |
| AT3G01530.1 | Thale cress | nucleus | 32.17 | 44.66 |
| KRG90844 | Soybean | nucleus | 46.85 | 43.65 |
| AT1G48000.1 | Thale cress | nucleus | 37.06 | 43.62 |
| KRH35934 | Soybean | nucleus | 45.8 | 42.53 |
| AT5G40350.1 | Thale cress | nucleus | 31.47 | 42.06 |
| AT3G27810.1 | Thale cress | nucleus | 32.87 | 41.59 |
| GSMUA_Achr3P21060_001 | Banana | nucleus | 41.96 | 39.6 |
| GSMUA_Achr2P22640_001 | Banana | nucleus | 39.51 | 38.7 |
| GSMUA_Achr6P09760_001 | Banana | nucleus | 41.61 | 38.64 |
| AT2G47190.1 | Thale cress | nucleus | 36.36 | 38.1 |
| GSMUA_Achr11P... | Banana | nucleus | 40.91 | 37.14 |
| Os01t0128000-01 | Rice | nucleus | 44.41 | 36.29 |
| TraesCS3D01G036200.1 | Wheat | nucleus | 42.66 | 35.47 |
| TraesCS3A01G044700.1 | Wheat | nucleus | 42.66 | 35.26 |
| Zm00001d040019_P001 | Maize | nucleus | 44.41 | 35.08 |
| AT5G59780.3 | Thale cress | nucleus | 28.67 | 34.89 |
| HORVU3Hr1G004050.1 | Barley | nucleus | 42.66 | 34.76 |
| TraesCS3B01G039100.1 | Wheat | nucleus | 42.66 | 34.76 |
| AT5G49620.2 | Thale cress | nucleus | 38.81 | 34.58 |
| Zm00001d008528_P001 | Maize | nucleus | 43.71 | 34.53 |
| AT3G06490.1 | Thale cress | nucleus | 38.46 | 34.06 |
| AT3G46130.1 | Thale cress | nucleus | 30.07 | 33.33 |
| AT4G13480.1 | Thale cress | nucleus | 30.42 | 33.33 |
| EES00381 | Sorghum | nucleus | 44.41 | 32.65 |
| AT3G24310.1 | Thale cress | nucleus | 30.42 | 32.34 |
| AT3G30210.1 | Thale cress | nucleus | 28.67 | 29.71 |
| AT3G53200.1 | Thale cress | nucleus | 24.48 | 29.41 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:843161 | UniProt:A0A178WLK6 | ProteinID:AAG52612.1 | ProteinID:AEE34781.1 |
| EMBL:AF062897 | ArrayExpress:AT1G68320 | EnsemblPlantsGene:AT1G68320 | RefSeq:AT1G68320 | TAIR:AT1G68320 | RefSeq:AT1G68320-TAIR-G |
| EnsemblPlants:AT1G68320.1 | TAIR:AT1G68320.1 | EMBL:AY519568 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 |
| GO:GO:0006629 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009653 | GO:GO:0009686 | GO:GO:0009719 |
| GO:GO:0009740 | GO:GO:0009751 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0010015 | GO:GO:0010373 |
| GO:GO:0016036 | GO:GO:0019748 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045892 |
| GO:GO:0055062 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | Symbol:MYB62 | InterPro:Myb_dom | RefSeq:NP_176999.1 |
| ProteinID:OAP19074.1 | PFAM:PF00249 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0025281 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF510 | UniProt:Q9C9G7 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00000A6D74 |
| SEG:seg | : | : | : | : | : |
Description
MYB62Transcription factor MYB62 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9G7]
Coordinates
chr1:+:25603676..25605181
Molecular Weight (calculated)
33240.8 Da
IEP (calculated)
5.871
GRAVY (calculated)
-0.837
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSMKKKKS FKESEDEELR RGPWTLEEDT LLTNYILHNG EGRWNHVAKC AGLKRTGKSC RLRWLNYLKP DIRRGNLTPQ EQLLILELHS KWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTT YCCPQNNNNN SLLLPSQSHD SLSMQKDIDY SGFSNIDGSS
201: STSTCMSHLT TVPHFMDQSN TNIIDGSMCF HEGNVQEFGG YVPGMEDYMV NSDISMECHV ADGYSAYEDV TQDPMWNVDD IWQFRE
101: QYLPGRTDNE IKNYWRTRVQ KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTT YCCPQNNNNN SLLLPSQSHD SLSMQKDIDY SGFSNIDGSS
201: STSTCMSHLT TVPHFMDQSN TNIIDGSMCF HEGNVQEFGG YVPGMEDYMV NSDISMECHV ADGYSAYEDV TQDPMWNVDD IWQFRE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.