Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73572 | Canola | nucleus | 81.93 | 79.59 |
| CDX78153 | Canola | nucleus | 80.67 | 78.37 |
| Bra006977.1-P | Field mustard | nucleus | 80.67 | 78.37 |
| Bra028550.1-P | Field mustard | nucleus | 77.73 | 77.08 |
| CDX67561 | Canola | nucleus | 76.05 | 75.42 |
| CDY13311 | Canola | nucleus | 75.21 | 73.36 |
| VIT_08s0007g04830.t01 | Wine grape | nucleus | 35.71 | 69.11 |
| Solyc09g008390.1.1 | Tomato | nucleus | 33.19 | 60.31 |
| PGSC0003DMT400072687 | Potato | nucleus | 31.93 | 55.88 |
| KRH19953 | Soybean | nucleus | 44.12 | 45.85 |
| Solyc10g083900.1.1 | Tomato | nucleus | 37.4 | 44.5 |
| KRH32555 | Soybean | nucleus | 43.28 | 44.4 |
| AT5G59780.3 | Thale cress | nucleus | 37.82 | 38.3 |
| AT3G46130.1 | Thale cress | nucleus | 38.66 | 35.66 |
| AT5G40350.1 | Thale cress | nucleus | 30.25 | 33.64 |
| AT3G01530.1 | Thale cress | nucleus | 28.57 | 33.01 |
| AT1G48000.1 | Thale cress | nucleus | 31.93 | 31.28 |
| AT3G27810.1 | Thale cress | nucleus | 28.57 | 30.09 |
| AT3G24310.1 | Thale cress | nucleus | 32.35 | 28.62 |
| AT4G13480.1 | Thale cress | nucleus | 30.67 | 27.97 |
| AT3G30210.1 | Thale cress | nucleus | 31.93 | 27.54 |
| AT2G47190.1 | Thale cress | nucleus | 31.09 | 27.11 |
| AT1G68320.1 | Thale cress | nucleus | 29.41 | 24.48 |
| AT5G49620.2 | Thale cress | nucleus | 31.51 | 23.36 |
| AT3G06490.1 | Thale cress | nucleus | 31.09 | 22.91 |
| AT1G25340.3 | Thale cress | nucleus | 28.99 | 22.4 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:824486 | ProteinID:AEE79047.1 | EMBL:AF062871 | EMBL:AK117256 |
| ArrayExpress:AT3G53200 | EnsemblPlantsGene:AT3G53200 | RefSeq:AT3G53200 | TAIR:AT3G53200 | RefSeq:AT3G53200-TAIR-G | EnsemblPlants:AT3G53200.1 |
| TAIR:AT3G53200.1 | EMBL:AY519599 | Symbol:AtMYB27 | EMBL:BT005257 | ProteinID:CAB64223.1 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009646 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_566980.1 | PFAM:PF00249 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF636 | UniProt:Q9SCP1 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000000C5AE | SEG:seg | : | : | : |
Description
MYB27Transcription factor MYB27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCP1]
Coordinates
chr3:-:19718253..19719507
Molecular Weight (calculated)
27997.7 Da
IEP (calculated)
7.050
GRAVY (calculated)
-0.982
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFKKEETLR RGPWLEEEDE RLVKVISLLG ERRWDSLAIV SGLKRSGKSC RLRWMNYLNP TLKRGPMSQE EERIIFQLHA LWGNKWSKIA RRLPGRTDNE
101: IKNYWRTHYR KKQEAQNYGK LFEWRGNTGE ELLHKYKETE ITRTKTTSQE HGFVEVVSME SGKEANGGVG GRESFGVMKS PYENRISDWI SEISTDQSEA
201: NLSEDHSSNS CSENNINIGT WWFQETRDFE EFSCSLWS
101: IKNYWRTHYR KKQEAQNYGK LFEWRGNTGE ELLHKYKETE ITRTKTTSQE HGFVEVVSME SGKEANGGVG GRESFGVMKS PYENRISDWI SEISTDQSEA
201: NLSEDHSSNS CSENNINIGT WWFQETRDFE EFSCSLWS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.