Factsheet for Solyc09g008390.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g04830.t01	Wine grape	nucleus	60.31	64.23
Solyc10g083900.1.1	Tomato	nucleus	74.05	48.5
Solyc02g086690.2.1	Tomato	nucleus	31.3	43.62
KRH19953	Soybean	nucleus	60.31	34.5
KRH32555	Soybean	nucleus	59.54	33.62
AT3G53200.1	Thale cress	nucleus	60.31	33.19
Solyc02g067760.2.1	Tomato	nucleus	48.85	32.82
Bra028550.1-P	Field mustard	nucleus	57.25	31.25
CDX67561	Canola	nucleus	56.49	30.83
CDY13311	Canola	nucleus	57.25	30.74
CDX73572	Canola	nucleus	57.25	30.61
Solyc11g073120.1.1	Tomato	nucleus	50.38	30.41
Bra006977.1-P	Field mustard	nucleus	55.73	29.8
CDX78153	Canola	nucleus	55.73	29.8
Solyc05g053150.1.1	Tomato	nucleus	50.38	28.82
Solyc06g005330.2.1	Tomato	nucleus	51.15	28.39
Solyc12g099130.1.1	Tomato	nucleus	49.62	27.66
Solyc02g089190.1.1	Tomato	nucleus	49.62	27.2
Solyc09g090790.2.1	Tomato	nucleus	51.15	26.69
Solyc12g099120.1.1	Tomato	nucleus	48.09	25.51
Solyc05g009230.1.1	Tomato	nucleus	48.09	22.99
Solyc03g119370.1.1	Tomato	nucleus	47.33	22.14
Solyc01g057910.2.1	Tomato	nucleus	48.09	21.95
Solyc05g053330.2.1	Tomato	nucleus	49.62	20.44
Solyc12g099140.1.1	Tomato	nucleus	46.56	20.33

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4CQM7	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF636
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc09g008390.1	EnsemblPlants:Solyc09g008390.1.1	UniParc:UPI000276BEF3

Description

No Description!

Coordinates

chr9:-:1852311..1853126

Molecular Weight (calculated)

15545.9 Da

IEP (calculated)

10.430

GRAVY (calculated)

-0.859

Length

131 amino acids

Sequence
(BLAST)

001: MDFTLQLVTM EEEKLRKGPW LDEEDERLAY VIAILGERRW DALAKASGLR RSGKSCRLRW MNYLRPNLKH GHITQDEEHL IIKLQKQLGN KWSKIAKQLP
101: GRTDNEIKNY WRSHLRKKTL ICEQGSIRHS P

Best Arabidopsis Sequence Match ( AT3G53200.1 )
(BLAST)

001: MDFKKEETLR RGPWLEEEDE RLVKVISLLG ERRWDSLAIV SGLKRSGKSC RLRWMNYLNP TLKRGPMSQE EERIIFQLHA LWGNKWSKIA RRLPGRTDNE
101: IKNYWRTHYR KKQEAQNYGK LFEWRGNTGE ELLHKYKETE ITRTKTTSQE HGFVEVVSME SGKEANGGVG GRESFGVMKS PYENRISDWI SEISTDQSEA
201: NLSEDHSSNS CSENNINIGT WWFQETRDFE EFSCSLWS

Arabidopsis Description

MYB27Transcription factor MYB27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.