Factsheet for Bra028550.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67561	Canola	nucleus	96.67	96.67
CDY13311	Canola	nucleus	94.17	92.62
Bra006977.1-P	Field mustard	nucleus	82.5	80.82
AT3G53200.1	Thale cress	nucleus	77.08	77.73
VIT_08s0007g04830.t01	Wine grape	nucleus	36.25	70.73
Solyc09g008390.1.1	Tomato	nucleus	31.25	57.25
PGSC0003DMT400072687	Potato	nucleus	32.08	56.62
KRH19953	Soybean	nucleus	42.5	44.54
KRH32555	Soybean	nucleus	42.92	44.4
Solyc10g083900.1.1	Tomato	nucleus	35.0	42.0
Bra018223.1-P	Field mustard	nucleus	37.08	35.32
Bra002533.1-P	Field mustard	nucleus	34.58	35.02
Bra020289.1-P	Field mustard	nucleus	34.17	34.75
Bra006694.1-P	Field mustard	nucleus	35.0	34.71
Bra039108.1-P	Field mustard	nucleus	27.08	31.71
Bra001005.1-P	Field mustard	nucleus	27.08	31.25
Bra020744.1-P	Field mustard	nucleus	31.67	29.57
Bra025410.1-P	Field mustard	nucleus	32.5	29.1
Bra015029.1-P	Field mustard	nucleus	32.5	28.78
Bra028369.1-P	Field mustard	nucleus	32.5	28.47
Bra001941.1-P	Field mustard	nucleus	32.08	28.1
Bra036202.1-P	Field mustard	nucleus	31.25	28.09
Bra039067.1-P	Field mustard	nucleus	26.67	27.59
Bra021389.1-P	Field mustard	nucleus	30.83	27.21
Bra025300.1-P	Field mustard	nucleus	26.25	27.16
Bra004473.1-P	Field mustard	nucleus	30.42	26.55
Bra012482.1-P	Field mustard	nucleus	29.17	24.65
Bra004041.1-P	Field mustard	nucleus	28.33	24.11
Bra001202.1-P	Field mustard	nucleus	30.42	24.01
Bra024760.1-P	Field mustard	nucleus	26.25	23.68
Bra020624.1-P	Field mustard	nucleus	30.83	23.27
Bra004297.1-P	Field mustard	nucleus	27.5	23.24
Bra033948.1-P	Field mustard	nucleus	27.5	23.16
Bra010022.1-P	Field mustard	nucleus	30.83	22.91
Bra010021.1-P	Field mustard	nucleus	30.83	22.91
Bra040274.1-P	Field mustard	nucleus	29.58	22.19
Bra029582.1-P	Field mustard	nucleus	29.58	22.05

Protein Annotations

EnsemblPlants:Bra028550.1	EnsemblPlants:Bra028550.1-P	EnsemblPlantsGene:Bra028550	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF636	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002543468	UniProt:M4EID5	MapMan:15.5.2.1	:	:

Description

AT3G53200 (E=6e-099) AtMYB27 | AtMYB27 (myb domain protein 27); DNA binding / transcription factor

Coordinates

chrA02:-:1028124..1029134

Molecular Weight (calculated)

28677.8 Da

IEP (calculated)

7.460

GRAVY (calculated)

-0.922

Length

240 amino acids

Sequence
(BLAST)

001: MDCKKEEALR RGPWLEEEDE RLVKFVTLLG ERRWDSLARV SGLKRSGKSC RLRWINYLNP SLKCGPMSQE EEIIIFQLHA LWGNKWSKIA RRLPGRTDNQ
101: IKNYWRTHLR KKVEAQNYDK IIDWRGNKGE ELLHKYKETE IMWTRTKTRE HGFDETVKEY KQKNMESDKE TNGVICETER FGVMNSPYEN RIIDWISKSD
201: ANIFEDHSSS STDNNININV GSWWFQEILD FEEFSCSLWS

Best Arabidopsis Sequence Match ( AT3G53200.1 )
(BLAST)

001: MDFKKEETLR RGPWLEEEDE RLVKVISLLG ERRWDSLAIV SGLKRSGKSC RLRWMNYLNP TLKRGPMSQE EERIIFQLHA LWGNKWSKIA RRLPGRTDNE
101: IKNYWRTHYR KKQEAQNYGK LFEWRGNTGE ELLHKYKETE ITRTKTTSQE HGFVEVVSME SGKEANGGVG GRESFGVMKS PYENRISDWI SEISTDQSEA
201: NLSEDHSSNS CSENNINIGT WWFQETRDFE EFSCSLWS

Arabidopsis Description

MYB27Transcription factor MYB27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.