Factsheet for Bra001202.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70282	Canola	nucleus	84.54	87.42
Bra040274.1-P	Field mustard	nucleus	86.51	82.19
Bra029582.1-P	Field mustard	nucleus	83.55	78.88
CDX74100	Canola	nucleus	82.89	74.78
GSMUA_Achr4P19990_001	Banana	nucleus	31.25	74.22
GSMUA_Achr5P21090_001	Banana	nucleus	41.12	68.68
Bra020624.1-P	Field mustard	nucleus	71.05	67.92
Bra010021.1-P	Field mustard	nucleus	69.08	65.02
Bra010022.1-P	Field mustard	nucleus	69.08	65.02
PGSC0003DMT400011745	Potato	nucleus	48.36	62.82
PGSC0003DMT400011750	Potato	nucleus	47.04	62.17
Solyc12g099130.1.1	Tomato	nucleus	47.04	60.85
PGSC0003DMT400022600	Potato	nucleus	59.21	60.61
Solyc01g057910.2.1	Tomato	nucleus	56.58	59.93
Solyc12g099120.1.1	Tomato	nucleus	48.36	59.51
VIT_05s0077g00500.t01	Wine grape	nucleus	57.57	57.19
GSMUA_Achr3P12730_001	Banana	nucleus	31.58	54.86
GSMUA_Achr8P10800_001	Banana	nucleus	46.05	54.69
GSMUA_Achr11P...	Banana	nucleus	46.38	53.82
GSMUA_Achr11P...	Banana	nucleus	46.71	53.79
GSMUA_Achr9P16640_001	Banana	nucleus	44.74	52.31
GSMUA_AchrUn_...	Banana	nucleus	48.03	51.96
PGSC0003DMT400011748	Potato	nucleus	50.33	51.86
GSMUA_Achr1P24960_001	Banana	nucleus	45.72	51.48
Solyc12g099140.1.1	Tomato	nucleus	49.67	50.33
GSMUA_AchrUn_...	Banana	nucleus	44.08	50.19
GSMUA_Achr8P29910_001	Banana	nucleus	44.08	49.81
Solyc05g053330.2.1	Tomato	nucleus	51.64	49.37
PGSC0003DMT400069841	Potato	nucleus	51.64	48.46
GSMUA_AchrUn_...	Banana	nucleus	42.11	46.55
Bra004473.1-P	Field mustard	nucleus	41.45	45.82
Bra021389.1-P	Field mustard	nucleus	40.79	45.59
TraesCS4A01G124900.1	Wheat	nucleus	47.7	45.45
TraesCS4D01G181100.1	Wheat	nucleus	47.7	45.45
Bra039108.1-P	Field mustard	nucleus	30.59	45.37
TraesCS4B01G179500.1	Wheat	nucleus	47.37	45.28
TraesCS4A01G172200.1	Wheat	nucleus	42.11	44.29
TraesCS5D01G099100.1	Wheat	nucleus	40.46	44.24
TraesCS5A01G087100.1	Wheat	nucleus	40.46	44.24
TraesCS5B01G093000.1	Wheat	nucleus	40.46	44.24
TraesCSU01G069000.1	Wheat	nucleus	42.11	44.14
Bra039067.1-P	Field mustard	nucleus	33.55	43.97
TraesCS4D01G142900.1	Wheat	nucleus	42.11	43.69
HORVU4Hr1G028780.1	Barley	nucleus	42.11	43.69
HORVU5Hr1G022690.1	Barley	nucleus	40.46	43.62
TraesCS3D01G413700.1	Wheat	nucleus	41.78	43.34
Bra001005.1-P	Field mustard	nucleus	29.61	43.27
KXG39500	Sorghum	nucleus	47.7	43.15
Bra025300.1-P	Field mustard	nucleus	32.89	43.1
GSMUA_Achr7P05570_001	Banana	nucleus	37.83	42.28
Zm00001d028930_P001	Maize	nucleus	46.71	42.26
TraesCS3D01G014800.1	Wheat	nucleus	38.49	42.09
TraesCS3B01G453300.1	Wheat	nucleus	42.11	41.69
TraesCS1A01G076200.1	Wheat	nucleus	44.41	41.67
HORVU1Hr1G016420.1	Barley	nucleus	44.41	41.54
TraesCS1D01G078600.1	Wheat	nucleus	44.08	41.49
EES00624	Sorghum	nucleus	41.45	41.18
TraesCS1B01G094500.1	Wheat	nucleus	44.08	41.1
TraesCS3A01G418100.1	Wheat	nucleus	41.45	40.91
Zm00001d047579_P001	Maize	nucleus	46.38	40.4
GSMUA_Achr11P...	Banana	nucleus	45.39	40.12
Zm00001d040594_P001	Maize	nucleus	39.47	39.6
KXG36991	Sorghum	nucleus	44.08	39.18
HORVU4Hr1G052490.5	Barley	nucleus, plastid	47.04	38.75
Bra004297.1-P	Field mustard	nucleus	36.18	38.73
GSMUA_Achr3P08370_001	Banana	nucleus	36.51	38.68
Bra004041.1-P	Field mustard	nucleus	35.53	38.3
Bra012482.1-P	Field mustard	nucleus	35.53	38.03
Zm00001d007191_P001	Maize	nucleus	43.09	37.75
HORVU3Hr1G092820.1	Barley	nucleus	40.79	37.46
Bra033948.1-P	Field mustard	nucleus	34.87	37.19
Zm00001d009066_P001	Maize	nucleus	38.82	37.11
Bra024760.1-P	Field mustard	nucleus	31.25	35.71
TraesCS2A01G097200.1	Wheat	nucleus	38.16	35.58
Zm00001d048647_P001	Maize	nucleus	41.12	35.51
TraesCS2D01G096000.1	Wheat	nucleus	38.16	35.37
TraesCS2B01G112600.1	Wheat	nucleus	38.49	35.24
Zm00001d010933_P001	Maize	nucleus	41.78	34.6
Bra020289.1-P	Field mustard	nucleus	26.64	34.32
Zm00001d030644_P001	Maize	nucleus	39.47	34.19
EES10257	Sorghum	nucleus	40.79	33.97
EES17207	Sorghum	nucleus	37.17	33.53
Bra002533.1-P	Field mustard	nucleus	25.99	33.33
Bra015029.1-P	Field mustard	nucleus	29.61	33.21
Os05t0132700-01	Rice	nucleus	23.36	33.02
Zm00001d024726_P001	Maize	nucleus	38.49	32.96
Bra001941.1-P	Field mustard	nucleus	29.61	32.85
Bra006694.1-P	Field mustard	nucleus	25.99	32.64
Bra028369.1-P	Field mustard	nucleus	29.28	32.48
HORVU2Hr1G016380.1	Barley	nucleus	37.17	31.13
Bra020744.1-P	Field mustard	nucleus	26.32	31.13
Bra025410.1-P	Field mustard	nucleus	27.3	30.97
Zm00001d024725_P001	Maize	nucleus	41.12	30.79
Bra006977.1-P	Field mustard	nucleus	24.67	30.61
Bra018223.1-P	Field mustard	nucleus	25.33	30.56
Bra028550.1-P	Field mustard	nucleus	24.01	30.42
KXG21220	Sorghum	nucleus	40.46	30.3
Bra036202.1-P	Field mustard	nucleus	25.66	29.21
KXG21221	Sorghum	nucleus	40.13	25.58

Protein Annotations

EnsemblPlants:Bra001202.1	EnsemblPlants:Bra001202.1-P	EnsemblPlantsGene:Bra001202	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF743	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00025403EC	UniProt:M4CAH3	MapMan:15.5.2.1	:	:

Description

AT3G06490 (E=4e-133) MYB108, AtMYB108, BOS1 | MYB108 (myb domain protein 108); DNA binding / transcription factor

Coordinates

chrA03:+:15282271..15284094

Molecular Weight (calculated)

35353.8 Da

IEP (calculated)

4.648

GRAVY (calculated)

-0.899

Length

304 amino acids

Sequence
(BLAST)

001: MDEKGRSFKN NNMEDEMDLK RGPWTAEEDF KLTNYIATHG EGRWNSLSRC AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YMWMPRLVER IQSAAASLTS TTGSATTSSC ITTSNNEFMT YDYNNNNFIG ERLGVMNNND
201: YITPENSSVA VSPVSDLTDY YNAPKPNPDQ NLVGPQMLPD NYFDYSGLLD EDLTATHEQS NLDWFENIDE VVSSSSESLW NIGESDEDFW FCQQQQQFNN
301: NNDF

Best Arabidopsis Sequence Match ( AT3G06490.1 )
(BLAST)

001: MDEKGRSLKN NNMEDEMDLK RGPWTAEEDF KLMNYIATNG EGRWNSLSRC AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF

Arabidopsis Description

MYB108Transcription factor MYB108 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDE1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.