Factsheet for GSMUA_AchrUn_randomP08600_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P19990_001	Banana	nucleus	37.01	81.25
GSMUA_Achr5P21090_001	Banana	nucleus	51.96	80.22
GSMUA_Achr11P...	Banana	nucleus	69.04	74.05
GSMUA_Achr3P01370_001	Banana	nucleus	31.67	71.77
CDX85422	Canola	nucleus	45.2	69.4
GSMUA_Achr8P10800_001	Banana	nucleus	62.28	68.36
GSMUA_Achr9P16640_001	Banana	nucleus	61.21	66.15
CDX86220	Canola	nucleus	45.2	65.8
GSMUA_Achr11P...	Banana	nucleus	54.8	58.33
GSMUA_Achr11P...	Banana	nucleus	70.82	57.85
GSMUA_Achr3P12730_001	Banana	nucleus	35.94	57.71
PGSC0003DMT400011745	Potato	nucleus	45.91	55.13
Solyc12g099130.1.1	Tomato	nucleus	45.91	54.89
PGSC0003DMT400011750	Potato	nucleus	44.84	54.78
GSMUA_AchrUn_...	Banana	nucleus	51.6	54.31
GSMUA_Achr8P29910_001	Banana	nucleus	51.96	54.28
GSMUA_Achr10P...	Banana	nucleus	33.45	53.71
Solyc12g099120.1.1	Tomato	nucleus	46.62	53.04
GSMUA_Achr1P24960_001	Banana	nucleus	50.89	52.96
GSMUA_Achr6P27290_001	Banana	nucleus	35.94	51.79
GSMUA_Achr1P21020_001	Banana	nucleus	35.23	50.77
AT1G48000.1	Thale cress	nucleus	43.77	50.62
GSMUA_Achr1P27270_001	Banana	nucleus	34.88	50.0
Solyc01g057910.2.1	Tomato	nucleus	50.18	49.13
VIT_05s0077g00500.t01	Wine grape	nucleus	53.02	48.69
GSMUA_AchrUn_...	Banana	nucleus	47.33	48.36
Bra001202.1-P	Field mustard	nucleus	51.96	48.03
PGSC0003DMT400022600	Potato	nucleus	50.53	47.81
PGSC0003DMT400011748	Potato	nucleus	48.4	46.1
KRH02414	Soybean	nucleus	52.67	45.96
CDY05611	Canola	nucleus	51.96	45.91
Solyc05g053330.2.1	Tomato	nucleus	51.96	45.91
CDY33891	Canola	nucleus	51.96	45.91
Bra020624.1-P	Field mustard	nucleus	51.96	45.91
KRH36928	Soybean	nucleus	55.52	45.88
KRG97314	Soybean	nucleus	55.16	45.45
KRH50671	Soybean	nucleus	52.31	45.23
CDY24688	Canola	nucleus	51.25	45.14
CDX99864	Canola	nucleus	51.25	45.0
Solyc12g099140.1.1	Tomato	nucleus	48.04	45.0
Bra040274.1-P	Field mustard	nucleus	51.25	45.0
CDY34949	Canola	nucleus	51.25	45.0
Bra029582.1-P	Field mustard	nucleus	51.25	44.72
AT5G49620.2	Thale cress	nucleus	50.89	44.55
PGSC0003DMT400069841	Potato	nucleus	51.25	44.44
CDY05270	Canola	nucleus	50.89	44.41
AT3G06490.1	Thale cress	nucleus	50.89	44.27
Bra010021.1-P	Field mustard	nucleus	50.18	43.65
Bra010022.1-P	Field mustard	nucleus	50.18	43.65
GSMUA_Achr7P05570_001	Banana	nucleus	41.99	43.38
CDY70282	Canola	nucleus	44.13	42.18
GSMUA_Achr3P08370_001	Banana	nucleus	42.7	41.81
GSMUA_Achr8P18460_001	Banana	nucleus	37.01	41.77
GSMUA_Achr4P29230_001	Banana	nucleus	27.76	38.24
GSMUA_Achr9P28370_001	Banana	nucleus	28.83	37.85
GSMUA_Achr10P...	Banana	nucleus	28.47	37.74
GSMUA_Achr6P09760_001	Banana	nucleus	40.93	37.34
GSMUA_Achr2P22640_001	Banana	nucleus	38.79	37.33
GSMUA_Achr2P16200_001	Banana	nucleus	27.05	37.07
GSMUA_Achr11P...	Banana	nucleus	27.76	36.62
GSMUA_Achr3P21060_001	Banana	nucleus	38.79	35.97
GSMUA_Achr6P15370_001	Banana	nucleus	26.69	35.89
GSMUA_Achr11P...	Banana	nucleus	40.21	35.87
GSMUA_Achr11P...	Banana	nucleus	29.18	35.65
GSMUA_Achr10P...	Banana	nucleus	28.47	35.4
GSMUA_Achr11P...	Banana	nucleus	29.54	34.44
CDX74100	Canola	nucleus	41.28	34.42
GSMUA_Achr8P02640_001	Banana	nucleus	28.83	34.32
GSMUA_Achr8P12710_001	Banana	nucleus	28.11	34.2
GSMUA_Achr10P...	Banana	nucleus	28.47	33.9
GSMUA_Achr5P28350_001	Banana	nucleus	28.47	33.76
GSMUA_Achr1P03450_001	Banana	nucleus	28.83	33.33
GSMUA_Achr7P18200_001	Banana	nucleus	26.33	30.71
GSMUA_Achr8P34340_001	Banana	nucleus	26.33	30.2
CDY58600	Canola	nucleus	25.27	21.98
GSMUA_Achr9P07000_001	Banana	nucleus	44.13	9.86

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP08600_001	EnsemblPlants:GSMUA_AchrUn_randomT08600_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG08600_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF743	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000294CC17	UniProt:M0U7H0	MapMan:15.5.2.1	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG08600_001]

Coordinates

chrchrUn_random:+:39288889..39289902

Molecular Weight (calculated)

31900.3 Da

IEP (calculated)

6.052

GRAVY (calculated)

-0.741

Length

281 amino acids

Sequence
(BLAST)

001: MEFHESTPQS EEELDLRRGP WTVDEDLILI NYIAAHGEGQ WNSLARSAGL RRTGKSCRLR WLNYLRPDVR RGNITPEEQL LILELHSRWG NRWSKIAQYL
101: PGRTDNEIKN YWRTRVQKHA KQLKCDVNSK QFKDVMRYLW MPRLVERIRA SSGNQVLSTP HEDDTFPMTC APQPNQVPEL ARVKRSPQKS STAGPASSSS
201: SSDSRGVQFS PPPVSDGYFG STTGGDDNIG DVIQTGECTG SWWESLPSPG GDTVLGFPEL DQITWGESLW SVEDIWLQQQ L

Best Arabidopsis Sequence Match ( AT5G49620.1 )
(BLAST)

001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF

Arabidopsis Description

AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.