Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26800702
|
gfp PMID:
26800702
doi
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China jiangyq@nwafu.edu.cn., State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020624.1-P | Field mustard | nucleus | 98.74 | 98.74 |
| CDY33891 | Canola | nucleus | 98.74 | 98.74 |
| CDX85422 | Canola | nucleus | 51.57 | 89.62 |
| CDX86220 | Canola | nucleus | 50.94 | 83.94 |
| GSMUA_Achr4P19990_001 | Banana | nucleus | 31.13 | 77.34 |
| AT5G49620.2 | Thale cress | nucleus | 72.64 | 71.96 |
| CDX86221 | Canola | nucleus | 15.72 | 71.43 |
| GSMUA_Achr5P21090_001 | Banana | nucleus | 39.94 | 69.78 |
| CDY24688 | Canola | nucleus | 69.18 | 68.97 |
| CDY05270 | Canola | nucleus | 68.24 | 67.39 |
| CDX99864 | Canola | nucleus | 67.3 | 66.88 |
| CDY34949 | Canola | nucleus | 67.3 | 66.88 |
| PGSC0003DMT400011745 | Potato | nucleus | 48.11 | 65.38 |
| PGSC0003DMT400011750 | Potato | nucleus | 46.86 | 64.78 |
| Solyc12g099130.1.1 | Tomato | nucleus | 46.54 | 62.98 |
| Solyc12g099120.1.1 | Tomato | nucleus | 48.74 | 62.75 |
| CDY70282 | Canola | nucleus | 57.86 | 62.59 |
| PGSC0003DMT400022600 | Potato | nucleus | 54.72 | 58.59 |
| Solyc01g057910.2.1 | Tomato | nucleus | 52.83 | 58.54 |
| GSMUA_Achr3P12730_001 | Banana | nucleus | 31.76 | 57.71 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 54.09 | 56.21 |
| CDY58599 | Canola | nucleus | 18.24 | 54.72 |
| GSMUA_Achr8P10800_001 | Banana | nucleus | 43.71 | 54.3 |
| GSMUA_Achr11P... | Banana | nucleus | 44.34 | 53.82 |
| GSMUA_Achr11P... | Banana | nucleus | 44.34 | 53.41 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.34 | 52.81 |
| GSMUA_Achr9P16640_001 | Banana | nucleus | 42.77 | 52.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.91 | 51.96 |
| CDX74100 | Canola | nucleus | 55.03 | 51.93 |
| KRH50671 | Soybean | nucleus | 52.83 | 51.69 |
| PGSC0003DMT400011748 | Potato | nucleus | 47.8 | 51.53 |
| Solyc12g099140.1.1 | Tomato | nucleus | 48.43 | 51.33 |
| CDX95420 | Canola | nucleus | 37.42 | 51.29 |
| KRH02414 | Soybean | nucleus | 51.89 | 51.24 |
| GSMUA_Achr1P24960_001 | Banana | nucleus | 43.08 | 50.74 |
| Solyc05g053330.2.1 | Tomato | nucleus | 49.37 | 49.37 |
| KRG97314 | Soybean | nucleus | 52.83 | 49.27 |
| GSMUA_Achr8P29910_001 | Banana | nucleus | 41.51 | 49.07 |
| KRH36928 | Soybean | nucleus | 52.2 | 48.82 |
| PGSC0003DMT400069841 | Potato | nucleus | 48.74 | 47.84 |
| CDY37512 | Canola | nucleus | 30.19 | 47.76 |
| CDY27504 | Canola | nucleus | 40.25 | 47.06 |
| CDY49063 | Canola | nucleus | 30.5 | 46.86 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 42.45 | 46.71 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 42.77 | 46.42 |
| TraesCSU01G069000.1 | Wheat | nucleus | 42.14 | 46.21 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 42.45 | 46.08 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.62 | 45.82 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 45.91 | 45.77 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 45.91 | 45.77 |
| CDX91944 | Canola | nucleus | 29.56 | 45.41 |
| TraesCS4B01G179500.1 | Wheat | nucleus | 45.28 | 45.28 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 41.51 | 45.05 |
| TraesCS5B01G093000.1 | Wheat | nucleus | 39.31 | 44.96 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 39.31 | 44.96 |
| TraesCS5A01G087100.1 | Wheat | nucleus | 38.99 | 44.6 |
| CDY00146 | Canola | nucleus | 23.27 | 44.58 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 39.31 | 44.33 |
| TraesCS3B01G453300.1 | Wheat | nucleus | 42.77 | 44.3 |
| CDX80085 | Canola | nucleus | 27.67 | 44.22 |
| CDX74303 | Canola | nucleus | 28.62 | 43.75 |
| CDY20036 | Canola | nucleus | 31.45 | 43.1 |
| GSMUA_Achr7P05570_001 | Banana | nucleus | 36.79 | 43.01 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 41.51 | 42.86 |
| CDY44433 | Canola | nucleus | 31.13 | 42.67 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 37.11 | 42.45 |
| Zm00001d028930_P001 | Maize | nucleus | 44.65 | 42.26 |
| CDX86471 | Canola | nucleus | 30.82 | 42.24 |
| KXG39500 | Sorghum | nucleus | 44.34 | 41.96 |
| EES00624 | Sorghum | nucleus | 39.94 | 41.5 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 41.82 | 41.05 |
| KXG36991 | Sorghum | nucleus | 44.03 | 40.94 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 41.51 | 40.87 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 41.51 | 40.62 |
| TraesCS1B01G094500.1 | Wheat | nucleus | 41.51 | 40.49 |
| GSMUA_Achr11P... | Banana | nucleus | 43.71 | 40.41 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 41.82 | 40.18 |
| Zm00001d007191_P001 | Maize | nucleus | 43.71 | 40.06 |
| Zm00001d040594_P001 | Maize | nucleus | 38.05 | 39.93 |
| Zm00001d047579_P001 | Maize | nucleus | 43.4 | 39.54 |
| CDX96033 | Canola | nucleus | 34.91 | 39.08 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 45.28 | 39.02 |
| CDY69488 | Canola | nucleus | 33.96 | 38.99 |
| CDY69953 | Canola | nucleus | 34.28 | 38.65 |
| CDY42115 | Canola | nucleus | 33.65 | 38.63 |
| CDY01906 | Canola | nucleus | 34.59 | 38.6 |
| Zm00001d009066_P001 | Maize | nucleus | 38.36 | 38.36 |
| GSMUA_Achr3P08370_001 | Banana | nucleus | 34.59 | 38.33 |
| CDY12705 | Canola | nucleus | 33.65 | 37.54 |
| CDX84981 | Canola | nucleus | 33.96 | 37.5 |
| CDY03859 | Canola | nucleus | 33.65 | 37.28 |
| CDY54094 | Canola | nucleus | 33.33 | 37.19 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 38.05 | 37.12 |
| TraesCS2D01G096000.1 | Wheat | nucleus | 38.05 | 36.89 |
| EES17207 | Sorghum | nucleus | 38.68 | 36.5 |
| TraesCS2B01G112600.1 | Wheat | nucleus | 38.05 | 36.45 |
| Zm00001d030644_P001 | Maize | nucleus | 39.94 | 36.18 |
| EES10257 | Sorghum | nucleus | 40.88 | 35.62 |
| Zm00001d010933_P001 | Maize | nucleus | 40.88 | 35.42 |
| Zm00001d048647_P001 | Maize | nucleus | 38.99 | 35.23 |
| Zm00001d024726_P001 | Maize | nucleus | 38.36 | 34.37 |
| CDX77436 | Canola | nucleus | 27.67 | 33.85 |
| CDY61190 | Canola | nucleus | 27.67 | 33.72 |
| Os05t0132700-01 | Rice | nucleus | 22.64 | 33.49 |
| CDY70097 | Canola | nucleus | 24.84 | 33.47 |
| CDX71075 | Canola | nucleus | 25.16 | 33.2 |
| CDX94829 | Canola | nucleus | 28.3 | 32.97 |
| CDX80230 | Canola | nucleus | 24.53 | 32.91 |
| CDY49581 | Canola | nucleus | 24.53 | 32.91 |
| CDX93006 | Canola | nucleus | 28.3 | 32.85 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 37.11 | 32.51 |
| CDY64694 | Canola | nucleus | 27.99 | 32.48 |
| CDY49231 | Canola | nucleus | 27.04 | 32.09 |
| Zm00001d024725_P001 | Maize | nucleus | 40.88 | 32.02 |
| CDX88722 | Canola | nucleus | 24.21 | 31.82 |
| KXG21220 | Sorghum | nucleus | 40.57 | 31.77 |
| CDY45895 | Canola | nucleus | 24.84 | 30.74 |
| CDX73572 | Canola | nucleus | 23.58 | 30.61 |
| CDX78153 | Canola | nucleus | 23.58 | 30.61 |
| CDX86354 | Canola | nucleus | 25.47 | 30.22 |
| CDX67561 | Canola | nucleus | 22.64 | 30.0 |
| CDY13311 | Canola | nucleus | 22.64 | 29.51 |
| CDX85285 | Canola | nucleus | 24.84 | 29.26 |
| CDY00083 | Canola | nucleus | 24.84 | 29.26 |
| CDY19978 | Canola | nucleus | 24.53 | 29.21 |
| CDX86040 | Canola | nucleus | 24.53 | 28.06 |
| CDX86041 | Canola | nucleus | 24.53 | 28.06 |
| CDX99125 | Canola | nucleus | 24.53 | 28.06 |
| KXG21221 | Sorghum | nucleus | 39.62 | 26.42 |
| CDY35782 | Canola | nucleus | 15.41 | 23.9 |
| CDY58600 | Canola | nucleus | 20.75 | 20.43 |
Protein Annotations
| EnsemblPlants:CDY05611 | EnsemblPlantsGene:GSBRNA2T00120575001 | Gene3D:1.10.10.60 | GO:A0A078EWL8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF743 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY05611 | ProteinID:CDY05611.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF301F | MapMan:15.5.2.1 | : |
Description
BnaC02g39260D
Coordinates
chrLK031963:+:164172..166113
Molecular Weight (calculated)
36713.7 Da
IEP (calculated)
5.072
GRAVY (calculated)
-0.791
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDKRSLMMN KNIGDFENNV DEEMDLRRGP WTVEEDFKLI NYISTHGEGR WNSLSRCAGL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLRCDVNSQ QFKDTMRYLW MPRLVERIQA SASTSTGSAT TSSCVTTPSD QFLMTSYDAG LNNNNNTNMD
201: HLSFMSNPNG YVTQETSSVS VSPTSGLTEY HIGSEVEKVE NNQDQSLVGP QIMSPPENYL DVNGGLLSED LTQSYHNWFE NDNGMIPPYS DSFWNIGSDE
301: DFWLLFQQQQ QLVNNGSF
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLRCDVNSQ QFKDTMRYLW MPRLVERIQA SASTSTGSAT TSSCVTTPSD QFLMTSYDAG LNNNNNTNMD
201: HLSFMSNPNG YVTQETSSVS VSPTSGLTEY HIGSEVEKVE NNQDQSLVGP QIMSPPENYL DVNGGLLSED LTQSYHNWFE NDNGMIPPYS DSFWNIGSDE
301: DFWLLFQQQQ QLVNNGSF
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
Arabidopsis Description
AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.