Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G069000.1 | Wheat | nucleus | 90.44 | 91.38 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 90.1 | 91.35 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 91.13 | 91.13 |
| Os11t0684000-01 | Rice | nucleus | 67.58 | 69.47 |
| CDX85422 | Canola | nucleus | 41.3 | 66.12 |
| CDX86220 | Canola | nucleus | 41.3 | 62.69 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 55.63 | 57.8 |
| PGSC0003DMT400011745 | Potato | nucleus | 41.98 | 52.56 |
| PGSC0003DMT400011750 | Potato | nucleus | 40.96 | 52.17 |
| Solyc12g099130.1.1 | Tomato | nucleus | 41.64 | 51.91 |
| Solyc12g099120.1.1 | Tomato | nucleus | 43.0 | 51.01 |
| Zm00001d048647_P001 | Maize | nucleus | 59.73 | 49.72 |
| EES10257 | Sorghum | nucleus | 61.77 | 49.59 |
| AT1G48000.1 | Thale cress | nucleus | 39.93 | 48.15 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 50.17 | 48.04 |
| Solyc01g057910.2.1 | Tomato | nucleus | 46.42 | 47.39 |
| PGSC0003DMT400022600 | Potato | nucleus | 46.76 | 46.13 |
| HORVU5Hr1G022710.1 | Barley | cytosol, nucleus | 10.58 | 44.93 |
| KRH02414 | Soybean | nucleus | 48.12 | 43.79 |
| Solyc05g053330.2.1 | Tomato | nucleus | 46.76 | 43.08 |
| PGSC0003DMT400011748 | Potato | nucleus | 43.0 | 42.71 |
| CDY05611 | Canola | nucleus | 46.08 | 42.45 |
| CDY33891 | Canola | nucleus | 46.08 | 42.45 |
| Bra020624.1-P | Field mustard | nucleus | 46.08 | 42.45 |
| PGSC0003DMT400069841 | Potato | nucleus | 46.76 | 42.28 |
| KRH50671 | Soybean | nucleus | 46.76 | 42.15 |
| Bra001202.1-P | Field mustard | nucleus | 43.69 | 42.11 |
| CDY24688 | Canola | nucleus | 44.71 | 41.07 |
| HORVU3Hr1G056980.1 | Barley | nucleus | 29.69 | 41.04 |
| KRH36928 | Soybean | nucleus | 47.44 | 40.88 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 46.08 | 40.79 |
| KRG97314 | Soybean | nucleus | 47.44 | 40.76 |
| Bra029582.1-P | Field mustard | nucleus | 44.71 | 40.68 |
| CDY05270 | Canola | nucleus | 44.71 | 40.68 |
| AT5G49620.2 | Thale cress | nucleus | 44.37 | 40.5 |
| Solyc12g099140.1.1 | Tomato | nucleus | 41.3 | 40.33 |
| Bra040274.1-P | Field mustard | nucleus | 44.03 | 40.31 |
| CDX99864 | Canola | nucleus | 44.03 | 40.31 |
| CDY34949 | Canola | nucleus | 44.03 | 40.31 |
| AT3G06490.1 | Thale cress | nucleus | 44.03 | 39.94 |
| Bra010021.1-P | Field mustard | nucleus | 43.69 | 39.63 |
| Bra010022.1-P | Field mustard | nucleus | 43.69 | 39.63 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 43.0 | 38.77 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 46.76 | 37.13 |
| CDY70282 | Canola | nucleus | 36.52 | 36.39 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 41.3 | 33.33 |
| HORVU3Hr1G004050.1 | Barley | nucleus | 39.93 | 33.33 |
| HORVU1Hr1G089770.2 | Barley | nucleus | 33.11 | 33.11 |
| HORVU5Hr1G021750.2 | Barley | nucleus | 25.6 | 31.65 |
| HORVU1Hr1G008810.3 | Barley | nucleus | 26.96 | 30.62 |
| HORVU6Hr1G057670.3 | Barley | nucleus | 27.99 | 30.37 |
| HORVU0Hr1G005100.1 | Barley | nucleus | 23.21 | 30.22 |
| HORVU2Hr1G087990.1 | Barley | nucleus | 26.28 | 29.73 |
| CDX74100 | Canola | nucleus | 34.13 | 29.67 |
| HORVU4Hr1G084360.3 | Barley | nucleus | 25.6 | 27.88 |
| CDY58600 | Canola | nucleus | 22.18 | 20.12 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G028780.1 | EnsemblPlantsGene:HORVU4Hr1G028780 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF548 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0001B636DE | UniProt:A0A287NNV8 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:181559367..181561278
Molecular Weight (calculated)
32675.0 Da
IEP (calculated)
5.372
GRAVY (calculated)
-0.614
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVVLQSRSS NNMAAEQEEE AELRRGPWTV DEDLTLINYI SDHGEGRWNA LARAAGLRRT GKSCRLRWLN YLRPDVKRGN FTADEQLLIL DLHSRWGNRW
101: SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL NCDVGSPTFK DAMRYLWMPR LVERIHAAAT TATGGEPSIG DTSCASGVTL MATAVATATA CPENNSPASA
201: VTSRSASSGS ITSELCGDEK NLHVHGNDDK TTSGGDWPMQ DVDQEFWAMH MQIQPDDGGL FQDHELSGWV QGFSDVGVSA DNLWSLEDIW KMQ
101: SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL NCDVGSPTFK DAMRYLWMPR LVERIHAAAT TATGGEPSIG DTSCASGVTL MATAVATATA CPENNSPASA
201: VTSRSASSGS ITSELCGDEK NLHVHGNDDK TTSGGDWPMQ DVDQEFWAMH MQIQPDDGGL FQDHELSGWV QGFSDVGVSA DNLWSLEDIW KMQ
001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
Arabidopsis Description
MYB112MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94CJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.