Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G142900.1 | Wheat | nucleus | 96.55 | 95.56 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 95.17 | 95.5 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 91.38 | 90.44 |
| Os11t0684000-01 | Rice | nucleus | 67.59 | 68.77 |
| CDX85422 | Canola | nucleus | 41.03 | 65.03 |
| CDX86220 | Canola | nucleus | 41.03 | 61.66 |
| PGSC0003DMT400011745 | Potato | nucleus | 42.07 | 52.14 |
| PGSC0003DMT400011750 | Potato | nucleus | 41.03 | 51.74 |
| Solyc12g099130.1.1 | Tomato | nucleus | 41.38 | 51.06 |
| Solyc12g099120.1.1 | Tomato | nucleus | 42.76 | 50.2 |
| Zm00001d048647_P001 | Maize | nucleus | 60.34 | 49.72 |
| EES10257 | Sorghum | nucleus | 61.72 | 49.04 |
| Solyc01g057910.2.1 | Tomato | nucleus | 47.24 | 47.74 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 50.34 | 47.71 |
| AT1G48000.1 | Thale cress | nucleus | 39.66 | 47.33 |
| PGSC0003DMT400022600 | Potato | nucleus | 47.59 | 46.46 |
| KRH02414 | Soybean | nucleus | 48.97 | 44.1 |
| KRH50671 | Soybean | nucleus | 48.28 | 43.08 |
| Solyc05g053330.2.1 | Tomato | nucleus | 46.9 | 42.77 |
| PGSC0003DMT400011748 | Potato | nucleus | 43.45 | 42.71 |
| KRG97314 | Soybean | nucleus | 49.66 | 42.23 |
| CDY05611 | Canola | nucleus | 46.21 | 42.14 |
| Bra020624.1-P | Field mustard | nucleus | 46.21 | 42.14 |
| CDY33891 | Canola | nucleus | 46.21 | 42.14 |
| Bra001202.1-P | Field mustard | nucleus | 44.14 | 42.11 |
| KRH36928 | Soybean | nucleus | 49.31 | 42.06 |
| PGSC0003DMT400069841 | Potato | nucleus | 46.9 | 41.98 |
| AT5G49620.2 | Thale cress | nucleus | 45.86 | 41.43 |
| CDY24688 | Canola | nucleus | 45.52 | 41.38 |
| Bra029582.1-P | Field mustard | nucleus | 45.52 | 40.99 |
| CDY05270 | Canola | nucleus | 45.52 | 40.99 |
| Bra040274.1-P | Field mustard | nucleus | 44.83 | 40.62 |
| CDX99864 | Canola | nucleus | 44.83 | 40.62 |
| CDY34949 | Canola | nucleus | 44.83 | 40.62 |
| Solyc12g099140.1.1 | Tomato | nucleus | 41.38 | 40.0 |
| Bra010022.1-P | Field mustard | nucleus | 44.48 | 39.94 |
| Bra010021.1-P | Field mustard | nucleus | 44.48 | 39.94 |
| AT3G06490.1 | Thale cress | nucleus | 44.48 | 39.94 |
| CDY70282 | Canola | nucleus | 36.9 | 36.39 |
| CDX74100 | Canola | nucleus | 34.14 | 29.38 |
| CDY58600 | Canola | nucleus | 21.72 | 19.5 |
Protein Annotations
| EnsemblPlants:TraesCSU01G069000.1 | EnsemblPlantsGene:TraesCSU01G069000 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF548 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:58869730..58870995
Molecular Weight (calculated)
32305.6 Da
IEP (calculated)
5.564
GRAVY (calculated)
-0.617
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMVLQSRSS NSMAAEPEEE AELRRGPWTV DEDLTLINYI ADHGEGRWNA LARAAGLRRT GKSCRLRWLN YLRPDVKRGN FTADEQLLIL DLHSRWGNRW
101: SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL NCDVGSATFK DAMRYLWMPH LVERIHAAAA TAGGDPTMGD TSCASGVTSM AATATTYPDN NSPASAVTTS
201: RSASSGSFTS ELCGEEKNLQ VHGSGEKTTS GGDWMQDADQ EFWAMHMQIQ PDDGGLFHVD HELSGWVQGF SDVGVSADNL WSLEDIWKMQ
101: SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL NCDVGSATFK DAMRYLWMPH LVERIHAAAA TAGGDPTMGD TSCASGVTSM AATATTYPDN NSPASAVTTS
201: RSASSGSFTS ELCGEEKNLQ VHGSGEKTTS GGDWMQDADQ EFWAMHMQIQ PDDGGLFHVD HELSGWVQGF SDVGVSADNL WSLEDIWKMQ
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
Arabidopsis Description
AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.