Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EES10257 | Sorghum | nucleus | 68.75 | 66.3 |
CDX85422 | Canola | nucleus | 32.39 | 62.3 |
Os11t0684000-01 | Rice | nucleus | 50.0 | 61.75 |
TraesCS4A01G172200.1 | Wheat | nucleus | 50.0 | 60.9 |
TraesCS4D01G142900.1 | Wheat | nucleus | 50.28 | 60.41 |
TraesCSU01G069000.1 | Wheat | nucleus | 49.72 | 60.34 |
HORVU4Hr1G028780.1 | Barley | nucleus | 49.72 | 59.73 |
CDX86220 | Canola | nucleus | 32.39 | 59.07 |
PGSC0003DMT400011750 | Potato | nucleus | 33.24 | 50.87 |
PGSC0003DMT400011745 | Potato | nucleus | 33.81 | 50.85 |
Solyc12g099130.1.1 | Tomato | nucleus | 33.52 | 50.21 |
Zm00001d030644_P001 | Maize | nucleus | 48.58 | 48.72 |
Solyc12g099120.1.1 | Tomato | nucleus | 34.09 | 48.58 |
Solyc01g057910.2.1 | Tomato | nucleus | 39.49 | 48.43 |
AT1G48000.1 | Thale cress | nucleus | 33.24 | 48.15 |
VIT_05s0077g00500.t01 | Wine grape | nucleus | 40.62 | 46.73 |
PGSC0003DMT400022600 | Potato | nucleus | 38.92 | 46.13 |
Zm00001d040594_P001 | Maize | nucleus | 37.5 | 43.56 |
PGSC0003DMT400011748 | Potato | nucleus | 35.51 | 42.37 |
KRH02414 | Soybean | nucleus | 38.64 | 42.24 |
KRH50671 | Soybean | nucleus | 38.07 | 41.23 |
Bra001202.1-P | Field mustard | nucleus | 35.51 | 41.12 |
Solyc05g053330.2.1 | Tomato | nucleus | 36.65 | 40.57 |
Zm00001d009066_P001 | Maize | nucleus | 36.65 | 40.57 |
PGSC0003DMT400069841 | Potato | nucleus | 37.22 | 40.43 |
Solyc12g099140.1.1 | Tomato | nucleus | 34.09 | 40.0 |
Zm00001d028930_P001 | Maize | nucleus | 38.07 | 39.88 |
KRH36928 | Soybean | nucleus | 38.07 | 39.41 |
CDX99864 | Canola | nucleus | 35.8 | 39.38 |
Bra040274.1-P | Field mustard | nucleus | 35.8 | 39.38 |
CDY34949 | Canola | nucleus | 35.8 | 39.38 |
CDY24688 | Canola | nucleus | 35.51 | 39.19 |
Bra020624.1-P | Field mustard | nucleus | 35.23 | 38.99 |
CDY33891 | Canola | nucleus | 35.23 | 38.99 |
CDY05611 | Canola | nucleus | 35.23 | 38.99 |
Bra029582.1-P | Field mustard | nucleus | 35.51 | 38.82 |
CDY05270 | Canola | nucleus | 35.51 | 38.82 |
KRG97314 | Soybean | nucleus | 37.5 | 38.71 |
AT3G06490.1 | Thale cress | nucleus | 35.23 | 38.39 |
AT5G49620.2 | Thale cress | nucleus | 34.94 | 38.32 |
Zm00001d047579_P001 | Maize | nucleus | 37.78 | 38.11 |
Zm00001d007191_P001 | Maize | nucleus | 37.5 | 38.04 |
Bra010021.1-P | Field mustard | nucleus | 34.66 | 37.77 |
Bra010022.1-P | Field mustard | nucleus | 34.66 | 37.77 |
Zm00001d024726_P001 | Maize | nucleus | 36.93 | 36.62 |
CDY70282 | Canola | nucleus | 30.11 | 36.05 |
Zm00001d010933_P001 | Maize | nucleus | 37.5 | 35.97 |
Zm00001d008528_P001 | Maize | nucleus | 35.8 | 34.81 |
Zm00001d044107_P001 | Maize | nucleus | 25.28 | 33.71 |
Zm00001d040019_P001 | Maize | nucleus | 34.38 | 33.43 |
Zm00001d048383_P001 | Maize | nucleus | 21.88 | 33.19 |
Zm00001d024725_P001 | Maize | nucleus | 37.22 | 32.27 |
Zm00001d030678_P001 | Maize | nucleus | 21.88 | 31.82 |
Zm00001d027623_P001 | Maize | nucleus | 22.16 | 31.33 |
Zm00001d017243_P001 | Maize | nucleus | 25.0 | 31.32 |
Zm00001d041576_P001 | Maize | nucleus | 21.59 | 30.4 |
Zm00001d048623_P002 | Maize | nucleus | 19.6 | 30.26 |
Zm00001d025823_P001 | Maize | nucleus | 23.86 | 30.22 |
CDX74100 | Canola | nucleus | 28.41 | 29.67 |
Zm00001d051117_P001 | Maize | nucleus | 20.74 | 26.16 |
Zm00001d035605_P001 | Maize | nucleus | 23.01 | 24.77 |
Zm00001d035604_P001 | Maize | nucleus | 21.88 | 20.92 |
CDY58600 | Canola | nucleus | 18.47 | 20.12 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:15.5.2.1 | ProteinID:AQK48322.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:K7TU66 | EMBL:KJ728414 | InterPro:Myb_dom |
PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF548 | InterPro:SANT/Myb | SMART:SM00717 |
SUPFAM:SSF46689 | UniParc:UPI000221A9C8 | EnsemblPlantsGene:Zm00001d048647 | EnsemblPlants:Zm00001d048647_P001 | EnsemblPlants:Zm00001d048647_T001 | SEG:seg |
Description
MYB-transcription factor 4Putative MYB DNA-binding domain superfamily protein
Coordinates
chr4:+:2600276..2602518
Molecular Weight (calculated)
38461.4 Da
IEP (calculated)
6.581
GRAVY (calculated)
-0.569
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: METALQQSAA TAGGGMRPAG AATTVKKARQ ELELEQEREL RFPQAAAAAD QGGLDEELRR GPWTVDEDLT LINYIADHGE GRWNALARAA GLKRTGKSCR
101: LRWLNYLRPD VKRGDFTADE QLLILDLHSR WGNRWSKIAA HLPGRTDNEI KNYWRTRVQK HAKQLNCDVN SKRFKDAMRF LWMPRLAERA ATAAHQPQPQ
201: HVAAACNNVL VAAAAAANSS SCCWSSPRSS AVTTAACSGS SSCSSLTSES AHNDDDGARP HAAAVLAAAA AATGDDDYWG AVTTTMQQNH HQQQQQNEQF
301: DFWSTASALQ HLTTAAADQD LTGWVQGFSD DGILSGSSSD SLWSLDDIWR MQ
101: LRWLNYLRPD VKRGDFTADE QLLILDLHSR WGNRWSKIAA HLPGRTDNEI KNYWRTRVQK HAKQLNCDVN SKRFKDAMRF LWMPRLAERA ATAAHQPQPQ
201: HVAAACNNVL VAAAAAANSS SCCWSSPRSS AVTTAACSGS SSCSSLTSES AHNDDDGARP HAAAVLAAAA AATGDDDYWG AVTTTMQQNH HQQQQQNEQF
301: DFWSTASALQ HLTTAAADQD LTGWVQGFSD DGILSGSSSD SLWSLDDIWR MQ
001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
Arabidopsis Description
MYB112MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94CJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.