Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048647_P001 | Maize | nucleus | 66.3 | 68.75 |
| Os11t0684000-01 | Rice | nucleus | 49.86 | 63.86 |
| CDX85422 | Canola | nucleus | 31.78 | 63.39 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 49.32 | 62.28 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 49.59 | 61.77 |
| TraesCSU01G069000.1 | Wheat | nucleus | 49.04 | 61.72 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 49.32 | 61.43 |
| CDX86220 | Canola | nucleus | 31.78 | 60.1 |
| PGSC0003DMT400011745 | Potato | nucleus | 32.05 | 50.0 |
| EES17207 | Sorghum | nucleus | 46.03 | 49.85 |
| Solyc12g099130.1.1 | Tomato | nucleus | 32.05 | 49.79 |
| PGSC0003DMT400011750 | Potato | nucleus | 31.23 | 49.57 |
| Solyc01g057910.2.1 | Tomato | nucleus | 38.36 | 48.78 |
| Solyc12g099120.1.1 | Tomato | nucleus | 32.6 | 48.18 |
| AT1G48000.1 | Thale cress | nucleus | 32.05 | 48.15 |
| PGSC0003DMT400022600 | Potato | nucleus | 37.81 | 46.46 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 38.63 | 46.08 |
| EES00624 | Sorghum | nucleus | 37.53 | 44.77 |
| Solyc05g053330.2.1 | Tomato | nucleus | 36.99 | 42.45 |
| KRH02414 | Soybean | nucleus | 37.26 | 42.24 |
| KRH36928 | Soybean | nucleus | 39.18 | 42.06 |
| KXG39500 | Sorghum | nucleus | 38.63 | 41.96 |
| PGSC0003DMT400011748 | Potato | nucleus | 33.7 | 41.69 |
| KRH50671 | Soybean | nucleus | 36.99 | 41.54 |
| PGSC0003DMT400069841 | Potato | nucleus | 36.71 | 41.36 |
| AT5G49620.2 | Thale cress | nucleus | 36.16 | 41.12 |
| KRG97314 | Soybean | nucleus | 38.36 | 41.06 |
| Bra020624.1-P | Field mustard | nucleus | 35.62 | 40.88 |
| CDY05611 | Canola | nucleus | 35.62 | 40.88 |
| CDY33891 | Canola | nucleus | 35.62 | 40.88 |
| Bra001202.1-P | Field mustard | nucleus | 33.97 | 40.79 |
| Solyc12g099140.1.1 | Tomato | nucleus | 33.15 | 40.33 |
| Bra010021.1-P | Field mustard | nucleus | 35.07 | 39.63 |
| Bra010022.1-P | Field mustard | nucleus | 35.07 | 39.63 |
| CDY24688 | Canola | nucleus | 34.25 | 39.19 |
| Bra029582.1-P | Field mustard | nucleus | 34.25 | 38.82 |
| Bra040274.1-P | Field mustard | nucleus | 33.97 | 38.75 |
| CDX99864 | Canola | nucleus | 33.97 | 38.75 |
| CDY34949 | Canola | nucleus | 33.97 | 38.75 |
| CDY05270 | Canola | nucleus | 33.97 | 38.51 |
| KXG36991 | Sorghum | nucleus | 35.62 | 38.01 |
| AT3G06490.1 | Thale cress | nucleus | 33.42 | 37.77 |
| CDY70282 | Canola | nucleus | 28.49 | 35.37 |
| KXG21220 | Sorghum | nucleus | 38.08 | 34.24 |
| EES00381 | Sorghum | nucleus | 35.34 | 33.16 |
| KXG23736 | Sorghum | nucleus | 21.64 | 32.92 |
| KXG29192 | Sorghum | nucleus | 20.27 | 32.46 |
| EES07157 | Sorghum | nucleus | 24.38 | 30.9 |
| EER92876 | Sorghum | nucleus | 20.82 | 30.04 |
| EES01143 | Sorghum | nucleus | 23.84 | 29.69 |
| KXG26684 | Sorghum | nucleus | 22.47 | 29.08 |
| CDX74100 | Canola | nucleus | 26.58 | 28.78 |
| KXG21221 | Sorghum | nucleus | 37.53 | 28.72 |
| KXG29190 | Sorghum | nucleus | 16.16 | 27.83 |
| OQU77249 | Sorghum | nucleus | 21.92 | 25.97 |
| EES17592 | Sorghum | nucleus | 21.64 | 23.65 |
| CDY58600 | Canola | nucleus | 17.53 | 19.81 |
Protein Annotations
| EnsemblPlants:EES10257 | EnsemblPlantsGene:SORBI_3005G217200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF548 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:EES10257 | ProteinID:EES10257.2 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00081AD891 | UniProt:C5Y7Z0 | MapMan:15.5.2.1 | : |
Description
hypothetical protein
Coordinates
chr5:-:70279397..70284523
Molecular Weight (calculated)
39636.0 Da
IEP (calculated)
6.504
GRAVY (calculated)
-0.520
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEMVLQQSQ SAGGGAGMFP GVAAAACRRG PSRPAATAPM MAKQEQVVAD EQDQQQAAGE EEGAGDELRR GPWTVDEDLT LINYIADHGE GRWNALARAA
101: GLKRTGKSCR LRWLNYLRPD VKRGDFTADE QLLILDLHSR WGNRWSKIAA HLPGRTDNEI KNYWRTRVQK HAKQLNCDVN SKRFKDAMRF LWMPRLAERA
201: TAAAHHHPPS PSLTTCVLGG GMAASSSSSA LMKMLDDATV SNRSSCSPSS AVTCSSSSCS SLTSVDTAHD DGGARPHAAS AAVAFTAADD DDYWGAATAT
301: TTTMQQQQQQ NDQHYDFWST ASALQHLCTA ADHDITGWVQ GFSDGGILSG SSSFWSLDDI WRMPQ
101: GLKRTGKSCR LRWLNYLRPD VKRGDFTADE QLLILDLHSR WGNRWSKIAA HLPGRTDNEI KNYWRTRVQK HAKQLNCDVN SKRFKDAMRF LWMPRLAERA
201: TAAAHHHPPS PSLTTCVLGG GMAASSSSSA LMKMLDDATV SNRSSCSPSS AVTCSSSSCS SLTSVDTAHD DGGARPHAAS AAVAFTAADD DDYWGAATAT
301: TTTMQQQQQQ NDQHYDFWST ASALQHLCTA ADHDITGWVQ GFSDGGILSG SSSFWSLDDI WRMPQ
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
Arabidopsis Description
AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.