Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024726_P001 | Maize | nucleus | 69.21 | 79.15 |
| CDX85422 | Canola | nucleus | 30.3 | 67.21 |
| CDX86220 | Canola | nucleus | 30.3 | 63.73 |
| KXG21221 | Sorghum | nucleus | 67.49 | 57.44 |
| PGSC0003DMT400011745 | Potato | nucleus | 29.06 | 50.43 |
| PGSC0003DMT400011750 | Potato | nucleus | 28.08 | 49.57 |
| Solyc12g099130.1.1 | Tomato | nucleus | 28.33 | 48.94 |
| Solyc12g099120.1.1 | Tomato | nucleus | 29.31 | 48.18 |
| AT1G48000.1 | Thale cress | nucleus | 28.82 | 48.15 |
| Solyc01g057910.2.1 | Tomato | nucleus | 33.0 | 46.69 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 34.48 | 45.75 |
| PGSC0003DMT400022600 | Potato | nucleus | 33.0 | 45.12 |
| EES00624 | Sorghum | nucleus | 33.5 | 44.44 |
| KXG39500 | Sorghum | nucleus | 35.96 | 43.45 |
| PGSC0003DMT400011748 | Potato | nucleus | 31.53 | 43.39 |
| Solyc05g053330.2.1 | Tomato | nucleus | 33.25 | 42.45 |
| KRH50671 | Soybean | nucleus | 33.74 | 42.15 |
| KRH36928 | Soybean | nucleus | 34.98 | 41.76 |
| KRG97314 | Soybean | nucleus | 34.98 | 41.64 |
| KRH02414 | Soybean | nucleus | 33.0 | 41.61 |
| Solyc12g099140.1.1 | Tomato | nucleus | 30.54 | 41.33 |
| Bra020624.1-P | Field mustard | nucleus | 31.77 | 40.57 |
| CDY33891 | Canola | nucleus | 31.77 | 40.57 |
| CDY05611 | Canola | nucleus | 31.77 | 40.57 |
| Bra001202.1-P | Field mustard | nucleus | 30.3 | 40.46 |
| Bra010022.1-P | Field mustard | nucleus | 32.02 | 40.25 |
| Bra010021.1-P | Field mustard | nucleus | 32.02 | 40.25 |
| PGSC0003DMT400069841 | Potato | nucleus | 32.02 | 40.12 |
| KXG36991 | Sorghum | nucleus | 33.5 | 39.77 |
| AT5G49620.2 | Thale cress | nucleus | 31.28 | 39.56 |
| CDY34949 | Canola | nucleus | 31.03 | 39.38 |
| CDX99864 | Canola | nucleus | 31.03 | 39.38 |
| Bra040274.1-P | Field mustard | nucleus | 31.03 | 39.38 |
| CDY24688 | Canola | nucleus | 30.79 | 39.19 |
| Bra029582.1-P | Field mustard | nucleus | 31.03 | 39.13 |
| CDY05270 | Canola | nucleus | 30.54 | 38.51 |
| AT3G06490.1 | Thale cress | nucleus | 30.54 | 38.39 |
| EES10257 | Sorghum | nucleus | 34.24 | 38.08 |
| EES17207 | Sorghum | nucleus | 31.03 | 37.39 |
| CDY70282 | Canola | nucleus | 24.88 | 34.35 |
| EES01143 | Sorghum | nucleus | 23.65 | 32.76 |
| EES00381 | Sorghum | nucleus | 31.28 | 32.65 |
| KXG23736 | Sorghum | nucleus | 18.72 | 31.67 |
| EER92876 | Sorghum | nucleus | 19.7 | 31.62 |
| EES07157 | Sorghum | nucleus | 22.41 | 31.6 |
| KXG29192 | Sorghum | nucleus | 17.24 | 30.7 |
| KXG29190 | Sorghum | nucleus | 15.76 | 30.19 |
| KXG26684 | Sorghum | nucleus | 20.2 | 29.08 |
| OQU77249 | Sorghum | nucleus | 21.43 | 28.25 |
| CDX74100 | Canola | nucleus | 22.66 | 27.3 |
| EES17592 | Sorghum | nucleus | 22.17 | 26.95 |
| CDY58600 | Canola | nucleus | 17.73 | 22.29 |
Protein Annotations
| EnsemblPlants:KXG21220 | EnsemblPlantsGene:SORBI_3009G031900 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF921 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:KXG21220 | ProteinID:KXG21220.1 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00081AD547 | UniProt:A0A1B6P675 | MapMan:15.5.2.1 | : |
Description
hypothetical protein
Coordinates
chr9:-:2856916..2858306
Molecular Weight (calculated)
43684.7 Da
IEP (calculated)
5.366
GRAVY (calculated)
-0.414
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMPMAMVSF DEDLDQMLLA TISPAGSSAT SSSAPAAAAA PPPVVAGSSS DDDEAAAVAV GADLRRGPWT VDEDILLVNY IAAHGEGRWN SLARSAGLKR
101: TGKSCRLRWL NYLRPDVRRG NITAEEQLLI LDLHSRWGNR WSKIAQHLPG RTDNEIKNYW RTRVQKHARH LRCDVNSAGF RHVVRHVWMP RLRERVQAAA
201: GRDDQMVATA GSGCGGVQQQ QQQQAAPAAS LAAVVQAPAA TSTASAPPAY CYDYYGRQHL VEQQQQGDHH GVPPAPSEAH RRRQYYSETA AGQTAAATAL
301: SPDDASSALR VPSTFTADDA STHYAAAYTS VAMATSTNDQ GCGPTTIEDE VLAGTTWSEL LATVTGGPHD DSSSMDMIGL PEFGFGDLED RDGLWSLDDL
401: CLQQLC
101: TGKSCRLRWL NYLRPDVRRG NITAEEQLLI LDLHSRWGNR WSKIAQHLPG RTDNEIKNYW RTRVQKHARH LRCDVNSAGF RHVVRHVWMP RLRERVQAAA
201: GRDDQMVATA GSGCGGVQQQ QQQQAAPAAS LAAVVQAPAA TSTASAPPAY CYDYYGRQHL VEQQQQGDHH GVPPAPSEAH RRRQYYSETA AGQTAAATAL
301: SPDDASSALR VPSTFTADDA STHYAAAYTS VAMATSTNDQ GCGPTTIEDE VLAGTTWSEL LATVTGGPHD DSSSMDMIGL PEFGFGDLED RDGLWSLDDL
401: CLQQLC
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
Arabidopsis Description
AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.