CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040594_P001	Maize	nucleus	82.03	82.84
Zm00001d009066_P001	Maize	nucleus	76.8	73.9
CDX85422	Canola	nucleus	36.6	61.2
Os01t0298400-01	Rice	extracellular, nucleus	58.17	60.75
CDX86220	Canola	nucleus	36.6	58.03
TraesCS3D01G413700.1	Wheat	nucleus	54.9	57.34
TraesCS3B01G453300.1	Wheat	nucleus	55.56	55.37
TraesCS3A01G418100.1	Wheat	nucleus	55.23	54.87
PGSC0003DMT400011750	Potato	nucleus	38.56	51.3
HORVU3Hr1G092820.1	Barley	nucleus	55.23	51.06
Solyc12g099130.1.1	Tomato	nucleus	38.89	50.64
PGSC0003DMT400011745	Potato	nucleus	38.56	50.43
Solyc12g099120.1.1	Tomato	nucleus	39.54	48.99
VIT_05s0077g00500.t01	Wine grape	nucleus	46.08	46.08
AT1G48000.1	Thale cress	nucleus	36.27	45.68
Solyc01g057910.2.1	Tomato	nucleus	42.48	45.3
PGSC0003DMT400022600	Potato	nucleus	43.14	44.44
Bra001202.1-P	Field mustard	nucleus	41.18	41.45
KRH02414	Soybean	nucleus	43.14	40.99
KRH50671	Soybean	nucleus	43.46	40.92
Solyc05g053330.2.1	Tomato	nucleus	42.48	40.88
AT5G49620.2	Thale cress	nucleus	42.81	40.81
CDY24688	Canola	nucleus	42.16	40.44
PGSC0003DMT400011748	Potato	nucleus	38.89	40.34
Bra029582.1-P	Field mustard	nucleus	42.16	40.06
AT3G06490.1	Thale cress	nucleus	42.16	39.94
CDY33891	Canola	nucleus	41.5	39.94
CDY05611	Canola	nucleus	41.5	39.94
Bra020624.1-P	Field mustard	nucleus	41.5	39.94
CDY05270	Canola	nucleus	41.83	39.75
CDY34949	Canola	nucleus	41.18	39.38
Bra040274.1-P	Field mustard	nucleus	41.18	39.38
CDX99864	Canola	nucleus	41.18	39.38
Solyc12g099140.1.1	Tomato	nucleus	38.56	39.33
KXG39500	Sorghum	nucleus	43.14	39.29
KRH36928	Soybean	nucleus	43.46	39.12
PGSC0003DMT400069841	Potato	nucleus	41.18	38.89
KRG97314	Soybean	nucleus	43.14	38.71
KXG36991	Sorghum	nucleus	43.14	38.6
EES17207	Sorghum	nucleus	42.16	38.28
Bra010022.1-P	Field mustard	nucleus	40.2	38.08
Bra010021.1-P	Field mustard	nucleus	40.2	38.08
EES10257	Sorghum	nucleus	44.77	37.53
GSMUA_Achr11P...	Banana	nucleus	39.22	34.88
CDY70282	Canola	nucleus	33.33	34.69
KXG21220	Sorghum	nucleus	44.44	33.5
KXG29192	Sorghum	nucleus	24.84	33.33
KXG23736	Sorghum	nucleus	25.82	32.92
EER92876	Sorghum	nucleus	25.16	30.43
EES01143	Sorghum	nucleus	28.1	29.35
EES07157	Sorghum	nucleus	27.45	29.17
EES00381	Sorghum	nucleus	36.93	29.05
KXG29190	Sorghum	nucleus	19.93	28.77
CDX74100	Canola	nucleus	31.37	28.49
KXG26684	Sorghum	nucleus	25.49	27.66
KXG21221	Sorghum	nucleus	41.83	26.83
OQU77249	Sorghum	nucleus	26.47	26.3
EES17592	Sorghum	nucleus	25.82	23.65
CDY58600	Canola	nucleus	23.2	21.98

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8060313	UniProt:C5XI40	EnsemblPlants:EES00624	ProteinID:EES00624
ProteinID:EES00624.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF659	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3003G142300	SUPFAM:SSF46689	unigene:Sbi.19975	UniParc:UPI0001A843E6	RefSeq:XP_002455504.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:14144699..14145884

Molecular Weight (calculated)

33695.8 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.578

Length

306 amino acids

Sequence
(BLAST)

001: MDALWKQGSS SLCDWPAAEA ELLRRGPWTV DEDALLAGYV AAHGEGRWNE LARAAGLRRT GKSCRLRWLN YLRPGVRRGD FTPREQLLIL DLHARWGNRW
101: SKIAAHLPGR TDNEVKNYWR TRVQKHAKQL GCDVGSHRFH DAIRNLWMPR LIERIHADET SATAAAAAAA ADNVSRYYSS TSPSHELSSS QPAAAYGNAV
201: PVGNCARAPS PDASSSVTGS SWSREASPPS QLQSSSCSTM AGCSTSTDQC HNNGCSSATS VVDMFDESWS ELLARANHDD TEFGFGLGET GDNWWSLEDI
301: WEQPLY

Best Arabidopsis Sequence Match ( AT1G68320.1 )
(BLAST)

001: MENSMKKKKS FKESEDEELR RGPWTLEEDT LLTNYILHNG EGRWNHVAKC AGLKRTGKSC RLRWLNYLKP DIRRGNLTPQ EQLLILELHS KWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTT YCCPQNNNNN SLLLPSQSHD SLSMQKDIDY SGFSNIDGSS
201: STSTCMSHLT TVPHFMDQSN TNIIDGSMCF HEGNVQEFGG YVPGMEDYMV NSDISMECHV ADGYSAYEDV TQDPMWNVDD IWQFRE

Arabidopsis Description

MYB62Transcription factor MYB62 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9G7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.