CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035605_P001	Maize	nucleus	79.34	81.04
OQU77249	Sorghum	nucleus	55.69	60.39
TraesCS1D01G043300.1	Wheat	nucleus	45.21	59.45
TraesCS1B01G055200.1	Wheat	nucleus	46.71	58.21
TraesCS1A01G042700.1	Wheat	nucleus	45.81	58.17
HORVU1Hr1G008810.3	Barley	nucleus	44.01	56.98
GSMUA_Achr6P15370_001	Banana	nucleus	31.14	49.76
GSMUA_Achr10P...	Banana	nucleus	33.53	47.46
PGSC0003DMT400040149	Potato	nucleus	30.84	47.25
Solyc11g073120.1.1	Tomato	nucleus	30.54	47.0
GSMUA_Achr11P...	Banana	nucleus	33.23	46.06
KXG23736	Sorghum	nucleus	32.93	45.83
AT5G59780.3	Thale cress	nucleus	32.04	45.53
Solyc06g005330.2.1	Tomato	nucleus	31.74	44.92
GSMUA_Achr5P28350_001	Banana	nucleus	31.74	44.73
KXG29192	Sorghum	nucleus	30.24	44.3
GSMUA_Achr7P18200_001	Banana	nucleus	31.44	43.57
Bra002533.1-P	Field mustard	nucleus	30.84	43.46
CDY49581	Canola	nucleus	30.84	43.46
CDX80230	Canola	nucleus	30.54	43.04
CDX88722	Canola	nucleus	30.84	42.56
Bra006694.1-P	Field mustard	nucleus	30.84	42.56
KRH10298	Soybean	nucleus	32.34	42.35
CDX71075	Canola	nucleus	30.54	42.32
VIT_06s0004g04140.t01	Wine grape	nucleus	32.34	42.19
Bra018223.1-P	Field mustard	nucleus	31.74	42.06
CDY70097	Canola	nucleus	29.64	41.95
Bra020289.1-P	Field mustard	nucleus	29.64	41.95
KRH23019	Soybean	nucleus	32.63	41.29
AT3G46130.1	Thale cress	nucleus	31.74	41.09
KRH24842	Soybean	nucleus	31.44	39.47
KRH29850	Soybean	nucleus	31.14	39.1
CDX86041	Canola	nucleus	31.74	38.13
CDX99125	Canola	nucleus	31.74	38.13
CDX86040	Canola	nucleus	31.44	37.77
EER92876	Sorghum	nucleus	23.35	30.83
KXG29190	Sorghum	nucleus	19.16	30.19
EES07157	Sorghum	nucleus	25.45	29.51
KXG26684	Sorghum	nucleus	24.85	29.43
EES01143	Sorghum	nucleus	25.15	28.67
KXG36991	Sorghum	nucleus	28.14	27.49
EES00624	Sorghum	nucleus	23.65	25.82
KXG39500	Sorghum	nucleus	24.85	24.7
EES17207	Sorghum	nucleus	24.55	24.33
KXG21220	Sorghum	nucleus	26.95	22.17
EES10257	Sorghum	nucleus	23.65	21.64
EES00381	Sorghum	nucleus	25.15	21.59
KXG21221	Sorghum	nucleus	26.65	18.66

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8068692	UniProt:C5YYM1	EnsemblPlants:EES17592	ProteinID:EES17592
ProteinID:EES17592.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF591	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3009G016600	SUPFAM:SSF46689	unigene:Sbi.17811	UniParc:UPI0001A88D09	RefSeq:XP_002439162.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:1549684..1551811

Molecular Weight (calculated)

36214.4 Da

IEP (calculated)

7.897

GRAVY (calculated)

-0.826

Length

334 amino acids

Sequence
(BLAST)

001: MDDHLHHQLM ATPAAAAASM CGSKSKKLQG GGGGEHRSSR GSGGGNSPPA AMRKGPWTEE EDAQLVWFVR LFGERRWDFL AKVSGLRRTG KSCRLRWVNY
101: LHPGLRRGRI TADEERLILQ LHEQWGSRWS RIARSLPGRT DNEIKNFWRT RARKQKAAAQ QQQGSRSSKT ASAFSGSSSS SSVTATTSRS SCSGSPSPSP
201: SPSSGGCGGT ATTSSSAVTE SALRQSSGGD NDDEDAELDE ASTTTAARQH QYHHQQQQQE CYASDHFFWN DIAAAEAASY MFIDGLAGAG PGGHPATAEV
301: GAEPPSSPTW EYCSDYSLWR IDDNEYYKKM LDSS

Best Arabidopsis Sequence Match ( AT3G46130.1 )
(BLAST)

001: MKMMQEEGNR KGPWTEQEDI LLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP GLKRGKMTPQ EERLVLELHA KWGNRWSKIA RKLPGRTDNE
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG

Arabidopsis Description

ATMYB48myb domain protein 48 [Source:TAIR;Acc:AT3G46130]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.