Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G043300.1 | Wheat | nucleus | 84.88 | 86.22 |
| TraesCS1B01G055200.1 | Wheat | nucleus | 87.98 | 84.7 |
| TraesCS1A01G042700.1 | Wheat | nucleus | 84.88 | 83.27 |
| GSMUA_Achr6P15370_001 | Banana | nucleus | 43.41 | 53.59 |
| GSMUA_Achr10P... | Banana | nucleus | 44.57 | 48.73 |
| OQU77249 | Sorghum | nucleus | 56.59 | 47.4 |
| PGSC0003DMT400040149 | Potato | nucleus | 39.53 | 46.79 |
| Solyc06g005330.2.1 | Tomato | nucleus | 42.64 | 46.61 |
| Solyc11g073120.1.1 | Tomato | nucleus | 39.15 | 46.54 |
| HORVU5Hr1G021750.2 | Barley | nucleus | 42.64 | 46.41 |
| GSMUA_Achr7P18200_001 | Banana | nucleus | 43.02 | 46.06 |
| VIT_06s0004g04140.t01 | Wine grape | nucleus | 45.35 | 45.7 |
| AT5G59780.3 | Thale cress | nucleus | 41.47 | 45.53 |
| GSMUA_Achr5P28350_001 | Banana | nucleus | 41.47 | 45.15 |
| Zm00001d035605_P001 | Maize | nucleus | 56.98 | 44.95 |
| CDY70097 | Canola | nucleus | 40.31 | 44.07 |
| Bra020289.1-P | Field mustard | nucleus | 40.31 | 44.07 |
| EES17592 | Sorghum | nucleus | 56.98 | 44.01 |
| GSMUA_Achr11P... | Banana | nucleus | 41.09 | 43.98 |
| CDX71075 | Canola | nucleus | 40.31 | 43.15 |
| CDY49581 | Canola | nucleus | 39.53 | 43.04 |
| Bra002533.1-P | Field mustard | nucleus | 39.53 | 43.04 |
| KRH10298 | Soybean | nucleus | 42.25 | 42.75 |
| CDX80230 | Canola | nucleus | 39.15 | 42.62 |
| Bra006694.1-P | Field mustard | nucleus | 39.53 | 42.15 |
| CDX88722 | Canola | nucleus | 39.15 | 41.74 |
| KRH23019 | Soybean | nucleus | 42.64 | 41.67 |
| AT3G46130.1 | Thale cress | nucleus | 41.47 | 41.47 |
| Bra018223.1-P | Field mustard | nucleus | 40.31 | 41.27 |
| Zm00001d035604_P001 | Maize | nucleus | 56.2 | 39.4 |
| KRH29850 | Soybean | nucleus | 39.53 | 38.35 |
| KRH24842 | Soybean | nucleus | 39.15 | 37.97 |
| CDX99125 | Canola | nucleus | 40.31 | 37.41 |
| CDX86040 | Canola | nucleus | 40.31 | 37.41 |
| CDX86041 | Canola | nucleus | 40.31 | 37.41 |
| HORVU3Hr1G056980.1 | Barley | nucleus | 27.91 | 33.96 |
| HORVU4Hr1G084360.3 | Barley | nucleus | 31.4 | 30.11 |
| HORVU0Hr1G005100.1 | Barley | nucleus | 25.58 | 29.33 |
| HORVU6Hr1G057670.3 | Barley | nucleus | 29.84 | 28.52 |
| HORVU2Hr1G087990.1 | Barley | nucleus | 27.52 | 27.41 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 29.84 | 27.3 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 30.62 | 26.96 |
| HORVU1Hr1G089770.2 | Barley | nucleus | 27.52 | 24.23 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 29.46 | 23.38 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 29.46 | 22.96 |
| HORVU3Hr1G004050.1 | Barley | nucleus | 29.46 | 21.65 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 29.84 | 20.87 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 26.74 | 19.01 |
| HORVU5Hr1G022710.1 | Barley | cytosol, nucleus | 1.55 | 5.8 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G008810.3 | EnsemblPlantsGene:HORVU1Hr1G008810 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF591 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000B4688E2 | UniProt:A0A287EKW5 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:19369578..19370912
Molecular Weight (calculated)
29215.1 Da
IEP (calculated)
6.367
GRAVY (calculated)
-0.736
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MCNNSGGAMA ARKGPWTEKE DAQLVWFVRL LGERRWDFLA QVSGLRRTGK SCRLRWVNYL HPGLKRGRIT ADEERLILTL HAEWGSRWSR IARKLPGRTD
101: NEIKNYWRTH MRKKAQEEKM MAKNKASSDS TAANSLTTTT TCSASTPTAT SSTTDAPQTS MGDEAEEEAS TSATEEKKAE VVQYCYAVDM DQLWNDIAAS
201: ERYPDMMMSW GAAGHAAVAA PALEPSSPVW DLCEQDYYSL WRIDDQEYYN KIDQHALN
101: NEIKNYWRTH MRKKAQEEKM MAKNKASSDS TAANSLTTTT TCSASTPTAT SSTTDAPQTS MGDEAEEEAS TSATEEKKAE VVQYCYAVDM DQLWNDIAAS
201: ERYPDMMMSW GAAGHAAVAA PALEPSSPVW DLCEQDYYSL WRIDDQEYYN KIDQHALN
001: MKMMQEEGNR KGPWTEQEDI LLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP GLKRGKMTPQ EERLVLELHA KWGNRWSKIA RKLPGRTDNE
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG
101: IKNYWRTHMR KKAQEKKRPV SPTSSFSNCS SSSVTTTTTN TQDTSCHSRK SSGEVSFYDT GGSRSTREMN QENEDVYSLD DIWREIDHSA VNIIKPVKDI
201: YSEQSHCLSY PNLASPSWES SLDSIWNMDA DKSKISSYFA NDQFPFCFQH SRSPWSSG
Arabidopsis Description
ATMYB48myb domain protein 48 [Source:TAIR;Acc:AT3G46130]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.