Factsheet for HORVU4Hr1G052490.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G181100.1	Wheat	nucleus	78.05	90.28
TraesCS4A01G124900.1	Wheat	nucleus	78.05	90.28
TraesCS4B01G179500.1	Wheat	nucleus	77.78	90.25
Os03t0315400-01	Rice	nucleus	66.4	74.47
KXG39500	Sorghum	nucleus	66.4	72.92
CDX85422	Canola	nucleus	35.5	71.58
Zm00001d028930_P001	Maize	nucleus	64.23	70.54
Zm00001d047579_P001	Maize	nucleus	64.23	67.91
CDX86220	Canola	nucleus	35.5	67.88
Solyc12g099130.1.1	Tomato	nucleus	34.42	54.04
PGSC0003DMT400011745	Potato	nucleus	34.15	53.85
GSMUA_Achr1P24960_001	Banana	nucleus	39.3	53.7
PGSC0003DMT400011750	Potato	nucleus	33.33	53.48
AT1G48000.1	Thale cress	nucleus	34.69	52.67
Solyc12g099120.1.1	Tomato	nucleus	34.69	51.82
VIT_05s0077g00500.t01	Wine grape	nucleus	41.73	50.33
Solyc01g057910.2.1	Tomato	nucleus	38.21	49.13
PGSC0003DMT400022600	Potato	nucleus	39.3	48.82
HORVU5Hr1G022690.1	Barley	nucleus	36.59	47.87
Bra001202.1-P	Field mustard	nucleus	38.75	47.04
HORVU4Hr1G028780.1	Barley	nucleus	37.13	46.76
PGSC0003DMT400011748	Potato	nucleus	37.13	46.44
KRH02414	Soybean	nucleus	39.57	45.34
Bra020624.1-P	Field mustard	nucleus	39.02	45.28
CDY33891	Canola	nucleus	39.02	45.28
CDY05611	Canola	nucleus	39.02	45.28
CDY24688	Canola	nucleus	39.02	45.14
Solyc12g099140.1.1	Tomato	nucleus	36.59	45.0
Solyc05g053330.2.1	Tomato	nucleus	38.75	44.97
KRH50671	Soybean	nucleus	39.57	44.92
CDY05270	Canola	nucleus	39.02	44.72
Bra029582.1-P	Field mustard	nucleus	38.75	44.41
Bra040274.1-P	Field mustard	nucleus	38.48	44.38
CDX99864	Canola	nucleus	38.48	44.38
CDY34949	Canola	nucleus	38.48	44.38
HORVU3Hr1G056980.1	Barley	nucleus	25.47	44.34
AT3G06490.1	Thale cress	nucleus	38.75	44.27
Bra010021.1-P	Field mustard	nucleus	38.75	44.27
Bra010022.1-P	Field mustard	nucleus	38.75	44.27
KRH36928	Soybean	nucleus	40.38	43.82
AT5G49620.2	Thale cress	nucleus	37.94	43.61
KRG97314	Soybean	nucleus	40.11	43.4
PGSC0003DMT400069841	Potato	nucleus	37.94	43.21
HORVU2Hr1G016380.1	Barley	nucleus	42.01	42.7
HORVU1Hr1G016420.1	Barley	nucleus	36.59	41.54
HORVU3Hr1G092820.1	Barley	nucleus	35.5	39.58
CDY70282	Canola	nucleus	31.44	39.46
HORVU1Hr1G089770.2	Barley	nucleus	28.18	35.49
HORVU0Hr1G005100.1	Barley	nucleus	20.6	33.78
CDX74100	Canola	nucleus	30.62	33.53
HORVU3Hr1G004050.1	Barley	nucleus	31.71	33.33
HORVU5Hr1G021750.2	Barley	nucleus	21.41	33.33
HORVU6Hr1G057670.3	Barley	nucleus	23.58	32.22
HORVU2Hr1G087990.1	Barley	nucleus	21.95	31.27
HORVU1Hr1G008810.3	Barley	nucleus	20.87	29.84
HORVU4Hr1G084360.3	Barley	nucleus	20.6	28.25
CDY58600	Canola	nucleus	18.7	21.36
HORVU5Hr1G022710.1	Barley	cytosol, nucleus	2.98	15.94

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:A0A287P258	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009628
GO:GO:0009987	GO:GO:0045893	GO:GO:1901002	GO:GO:1902584	EnsemblPlantsGene:HORVU4Hr1G052490	EnsemblPlants:HORVU4Hr1G052490.5
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF743	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SignalP:SignalP-noTM	UniParc:UPI000B4615B7
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:435950088..435952217

Molecular Weight (calculated)

40682.7 Da

IEP (calculated)

6.127

GRAVY (calculated)

-0.407

Length

369 amino acids

Sequence
(BLAST)

001: NPSHAPHTLL FSCLLFSAQQ HSASISILKQ TKPNQNLLGV ASFICRRRGG GRLELMDMAH ERDSSSEEEV MAGDLRRGPW TVEEDILLVN YIAAHGEGRW
101: NSLARSAAGL KRTGKSCRLR WLNYLRPDLR RGSITPQEQL LILELHSRWG NRWSKIAQHL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDVMRYLW
201: MPRLVERIQA ASDAAAAHTP LSWQQHHDAL YDSPELPVDA CWPAELAAPI TSSVAELSST TTGTAGSSSP STTDSGAGAQ PGWPAAADGA EWFTTACDAS
301: SAAAAAAAMC DTDQLIQQQQ SQLAGAWTSE PLPSLGFPEL GVADLDMGSF DVDSIWSMDD LWYTQPQFV

Best Arabidopsis Sequence Match ( AT5G49620.1 )
(BLAST)

001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF

Arabidopsis Description

AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.