Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85422 | Canola | nucleus | 46.08 | 77.05 |
| GSMUA_Achr4P19990_001 | Banana | nucleus | 32.03 | 76.56 |
| GSMUA_Achr5P21090_001 | Banana | nucleus | 44.44 | 74.73 |
| CDX86220 | Canola | nucleus | 45.75 | 72.54 |
| PGSC0003DMT400011745 | Potato | nucleus | 49.67 | 64.96 |
| PGSC0003DMT400011750 | Potato | nucleus | 48.69 | 64.78 |
| Solyc12g099130.1.1 | Tomato | nucleus | 49.35 | 64.26 |
| Solyc12g099120.1.1 | Tomato | nucleus | 50.98 | 63.16 |
| GSMUA_Achr3P12730_001 | Banana | nucleus | 35.95 | 62.86 |
| Solyc01g057910.2.1 | Tomato | nucleus | 58.82 | 62.72 |
| PGSC0003DMT400022600 | Potato | nucleus | 59.15 | 60.94 |
| GSMUA_Achr11P... | Banana | nucleus | 51.31 | 59.47 |
| KRH02414 | Soybean | nucleus | 62.42 | 59.32 |
| GSMUA_Achr11P... | Banana | nucleus | 50.33 | 58.78 |
| KRH50671 | Soybean | nucleus | 61.44 | 57.85 |
| Bra001202.1-P | Field mustard | nucleus | 57.19 | 57.57 |
| GSMUA_Achr8P10800_001 | Banana | nucleus | 47.71 | 57.03 |
| GSMUA_Achr9P16640_001 | Banana | nucleus | 48.04 | 56.54 |
| GSMUA_Achr1P24960_001 | Banana | nucleus | 49.67 | 56.3 |
| KRH36928 | Soybean | nucleus | 62.09 | 55.88 |
| KRG97314 | Soybean | nucleus | 62.09 | 55.72 |
| CDY24688 | Canola | nucleus | 57.84 | 55.49 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.37 | 55.43 |
| VIT_08s0007g04830.t01 | Wine grape | nucleus | 22.22 | 55.28 |
| AT1G48000.1 | Thale cress | nucleus | 43.79 | 55.14 |
| VIT_14s0066g01090.t01 | Wine grape | nucleus | 33.99 | 55.03 |
| CDY34949 | Canola | nucleus | 57.19 | 54.69 |
| CDX99864 | Canola | nucleus | 57.19 | 54.69 |
| Bra040274.1-P | Field mustard | nucleus | 57.19 | 54.69 |
| CDY05270 | Canola | nucleus | 57.52 | 54.66 |
| Bra029582.1-P | Field mustard | nucleus | 57.52 | 54.66 |
| PGSC0003DMT400011748 | Potato | nucleus | 52.61 | 54.58 |
| CDY33891 | Canola | nucleus | 56.21 | 54.09 |
| CDY05611 | Canola | nucleus | 56.21 | 54.09 |
| Bra020624.1-P | Field mustard | nucleus | 56.21 | 54.09 |
| GSMUA_Achr8P29910_001 | Banana | nucleus | 46.73 | 53.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.69 | 53.02 |
| Solyc12g099140.1.1 | Tomato | nucleus | 51.31 | 52.33 |
| Bra010022.1-P | Field mustard | nucleus | 54.9 | 52.01 |
| Bra010021.1-P | Field mustard | nucleus | 54.9 | 52.01 |
| Solyc05g053330.2.1 | Tomato | nucleus | 53.92 | 51.89 |
| VIT_07s0005g01950.t01 | Wine grape | nucleus | 46.08 | 51.84 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 48.04 | 50.87 |
| PGSC0003DMT400069841 | Potato | nucleus | 53.59 | 50.62 |
| TraesCSU01G069000.1 | Wheat | nucleus | 47.71 | 50.34 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 48.04 | 50.17 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 48.04 | 50.17 |
| TraesCS5B01G093000.1 | Wheat | nucleus | 45.42 | 50.0 |
| TraesCS5A01G087100.1 | Wheat | nucleus | 45.1 | 49.64 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 51.63 | 49.53 |
| CDY70282 | Canola | nucleus | 47.39 | 49.32 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 51.31 | 49.22 |
| TraesCS4B01G179500.1 | Wheat | nucleus | 50.98 | 49.06 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 45.1 | 48.94 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 44.44 | 48.92 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 45.42 | 47.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.16 | 46.91 |
| KXG39500 | Sorghum | nucleus | 50.98 | 46.43 |
| GSMUA_Achr7P05570_001 | Banana | nucleus | 41.18 | 46.32 |
| EES00624 | Sorghum | nucleus | 46.08 | 46.08 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 41.18 | 45.32 |
| TraesCS3B01G453300.1 | Wheat | nucleus | 45.1 | 44.95 |
| Zm00001d028930_P001 | Maize | nucleus | 49.35 | 44.94 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 44.77 | 44.48 |
| Zm00001d040594_P001 | Maize | nucleus | 43.79 | 44.22 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 46.41 | 43.96 |
| TraesCS1B01G094500.1 | Wheat | nucleus | 46.73 | 43.87 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 46.41 | 43.83 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 46.41 | 43.69 |
| GSMUA_Achr11P... | Banana | nucleus | 48.04 | 42.73 |
| EES17207 | Sorghum | nucleus | 47.06 | 42.73 |
| Zm00001d047579_P001 | Maize | nucleus | 48.69 | 42.69 |
| KXG36991 | Sorghum | nucleus | 47.39 | 42.4 |
| CDX74100 | Canola | nucleus | 46.41 | 42.14 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 50.33 | 41.73 |
| GSMUA_Achr3P08370_001 | Banana | nucleus | 38.89 | 41.46 |
| Zm00001d030644_P001 | Maize | nucleus | 47.39 | 41.31 |
| Zm00001d007191_P001 | Maize | nucleus | 46.08 | 40.63 |
| Zm00001d048647_P001 | Maize | nucleus | 46.73 | 40.62 |
| Zm00001d009066_P001 | Maize | nucleus | 42.16 | 40.57 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 43.79 | 40.48 |
| VIT_01s0011g03730.t01 | Wine grape | nucleus | 37.91 | 40.28 |
| TraesCS2B01G112600.1 | Wheat | nucleus | 42.48 | 39.16 |
| TraesCS2D01G096000.1 | Wheat | nucleus | 41.83 | 39.02 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 41.5 | 38.96 |
| EES10257 | Sorghum | nucleus | 46.08 | 38.63 |
| Zm00001d024726_P001 | Maize | nucleus | 44.12 | 38.03 |
| Zm00001d010933_P001 | Maize | nucleus | 44.44 | 37.06 |
| VIT_17s0000g03560.t01 | Wine grape | nucleus | 39.22 | 36.59 |
| Os05t0132700-01 | Rice | nucleus | 24.51 | 34.88 |
| KXG21220 | Sorghum | nucleus | 45.75 | 34.48 |
| VIT_05s0049g02260.t01 | Wine grape | nucleus | 28.76 | 34.38 |
| Zm00001d024725_P001 | Maize | nucleus | 44.77 | 33.74 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 39.87 | 33.61 |
| VIT_14s0083g01060.t01 | Wine grape | nucleus | 27.12 | 33.6 |
| VIT_06s0004g04140.t01 | Wine grape | nucleus | 27.12 | 32.42 |
| KXG21221 | Sorghum | nucleus | 45.1 | 28.93 |
| CDY58600 | Canola | nucleus | 22.88 | 21.67 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100248153 | wikigene:100248153 | MapMan:15.5.2.1 | ProteinID:ACQ42220 | ProteinID:ACQ42220.1 |
| EMBL:AM447505 | ProteinID:CAN63179 | ProteinID:CAN63179.1 | ProteinID:CBI22842 | ProteinID:CBI22842.3 | UniProt:D7SYH2 |
| EMBL:FJ905103 | EMBL:FN595246 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| EntrezGene:LOC100248153 | wikigene:LOC100248153 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF743 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00015CC0E6 | ArrayExpress:VIT_05s0077g00500 |
| EnsemblPlantsGene:VIT_05s0077g00500 | EnsemblPlants:VIT_05s0077g00500.t01 | unigene:Vvi.5565 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:+:330339..332086
Molecular Weight (calculated)
33986.4 Da
IEP (calculated)
5.173
GRAVY (calculated)
-0.547
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVNGRGGSS TVLSEEEMDL RRGPWTVEED LTLVNYIATQ GEGRWNSLAR CAGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQLLILELH SRWGNRWSKI
101: AQHLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSKQFKDTM RYLWMPRLVE RIQAAAAATS GSSPAAVAAH QFSGSCDIVA GSAAVPQMAA GGADFYGGQV
201: STGYTPENSS TAASSDSFGA QVSPVSDLTE IYNFPVSDNQ NPDFFQTGQV GYTDSLISPS GYFNQGLDFQ SMEPNTQWYE GGDTATADNL WNVEDIWSVQ
301: TQFTNI
101: AQHLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSKQFKDTM RYLWMPRLVE RIQAAAAATS GSSPAAVAAH QFSGSCDIVA GSAAVPQMAA GGADFYGGQV
201: STGYTPENSS TAASSDSFGA QVSPVSDLTE IYNFPVSDNQ NPDFFQTGQV GYTDSLISPS GYFNQGLDFQ SMEPNTQWYE GGDTATADNL WNVEDIWSVQ
301: TQFTNI
001: MDEKGRSLKN NNMEDEMDLK RGPWTAEEDF KLMNYIATNG EGRWNSLSRC AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
101: QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF
201: GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN
301: IGETDEEFWF LQQQQQFNNN GSF
Arabidopsis Description
MYB108Transcription factor MYB108 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDE1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.