Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0025g03450.t01 | |
| VIT_07s0104g00090.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47190.1 | VIT_02s0025g03450.t01 | AT1G63650.1 | 12056412 |
| AT2G47190.1 | VIT_07s0104g00090.t01 | AT4G09820.1 | 18532977 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH68299 | Soybean | nucleus | 48.53 | 55.7 |
| KRH31759 | Soybean | nucleus | 47.79 | 55.08 |
| VIT_08s0007g04830.t01 | Wine grape | nucleus | 24.26 | 53.66 |
| KRH18107 | Soybean | nucleus | 24.63 | 53.17 |
| KRG96561 | Soybean | nucleus | 48.53 | 50.77 |
| KRH49797 | Soybean | nucleus | 26.47 | 49.66 |
| KRH69178 | Soybean | nucleus | 46.69 | 48.85 |
| VIT_14s0066g01090.t01 | Wine grape | nucleus | 33.82 | 48.68 |
| KRG96563 | Soybean | nucleus | 41.91 | 47.9 |
| KRH68301 | Soybean | nucleus | 46.32 | 47.37 |
| CDX95420 | Canola | nucleus | 40.07 | 46.98 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 51.84 | 46.08 |
| KRH31760 | Soybean | nucleus | 47.43 | 45.74 |
| AT2G47190.1 | Thale cress | nucleus | 43.75 | 43.59 |
| CDY27504 | Canola | nucleus | 43.01 | 43.01 |
| Bra021389.1-P | Field mustard | nucleus | 43.01 | 43.01 |
| Bra004473.1-P | Field mustard | nucleus | 42.65 | 42.18 |
| CDX80085 | Canola | nucleus | 30.15 | 41.21 |
| VIT_01s0011g03730.t01 | Wine grape | nucleus | 41.18 | 38.89 |
| VIT_17s0000g03560.t01 | Wine grape | nucleus | 43.38 | 35.98 |
| VIT_05s0049g02260.t01 | Wine grape | nucleus | 32.35 | 34.38 |
| VIT_14s0083g01060.t01 | Wine grape | nucleus | 28.31 | 31.17 |
| VIT_06s0004g04140.t01 | Wine grape | nucleus | 27.57 | 29.3 |
| CDX86221 | Canola | nucleus | 4.04 | 15.71 |
| HORVU5Hr1G022710.1 | Barley | cytosol, nucleus | 3.68 | 14.49 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100260647 | wikigene:100260647 | MapMan:15.5.2.1 | ProteinID:ACM46018 | ProteinID:ACM46018.1 |
| EMBL:AM479230 | ProteinID:CAN66274 | ProteinID:CAN66274.1 | ProteinID:CBI36992 | ProteinID:CBI36992.3 | UniProt:D7U2M6 |
| EMBL:FJ600323 | EMBL:FN596502 | GO:GO:0000978 | GO:GO:0000981 | GO:GO:0001046 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005516 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006357 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009414 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009723 |
| GO:GO:0009737 | GO:GO:0009751 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0016036 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045893 | GO:GO:0046686 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| EntrezGene:LOC100260647 | wikigene:LOC100260647 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF494 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001BE4734 | ArrayExpress:VIT_07s0005g01950 |
| EnsemblPlantsGene:VIT_07s0005g01950 | EnsemblPlants:VIT_07s0005g01950.t01 | unigene:Vvi.25857 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7:-:4390854..4392232
Molecular Weight (calculated)
30944.1 Da
IEP (calculated)
6.252
GRAVY (calculated)
-0.789
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMDLRKGPW TAEEDTLLNN YITIHGEGRW NSLARCAGLK RTGKSCRLRW LNYLRPNVKR GNITLQEQLL ILELHSRYGN RWSKIAQHLP GRTDNEIKNY
101: WRTRVQKQAK QLKCDVNSKQ FRDTMRYVWM PRLVERIKAA GGDSTPTAPA TYGHHMSSQI LDMPRNGEFG LGYSDPGLRP EFSGGPSEGS ETQVSPVSDM
201: TDYYDFSGGH CSDSQQNGVI SYPEQADTSS GCLEFEGLEQ SNGWSLGGGD SLENLLNDED IWFLKQQFFD DF
101: WRTRVQKQAK QLKCDVNSKQ FRDTMRYVWM PRLVERIKAA GGDSTPTAPA TYGHHMSSQI LDMPRNGEFG LGYSDPGLRP EFSGGPSEGS ETQVSPVSDM
201: TDYYDFSGGH CSDSQQNGVI SYPEQADTSS GCLEFEGLEQ SNGWSLGGGD SLENLLNDED IWFLKQQFFD DF
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
Arabidopsis Description
AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.