Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80085 | Canola | nucleus | 84.91 | 99.0 |
| Bra004473.1-P | Field mustard | nucleus | 90.52 | 76.36 |
| AT2G47190.1 | Thale cress | nucleus | 86.21 | 73.26 |
| CDY27504 | Canola | nucleus | 82.33 | 70.22 |
| CDX85422 | Canola | nucleus | 48.28 | 61.2 |
| CDX86220 | Canola | nucleus | 48.28 | 58.03 |
| CDY58599 | Canola | nucleus | 22.84 | 50.0 |
| KRH68299 | Soybean | nucleus | 46.98 | 45.99 |
| KRG96561 | Soybean | nucleus | 47.41 | 42.31 |
| CDY37512 | Canola | nucleus | 35.34 | 40.8 |
| KRH69178 | Soybean | nucleus | 45.69 | 40.77 |
| CDY49063 | Canola | nucleus | 35.78 | 40.1 |
| CDX91944 | Canola | nucleus | 35.78 | 40.1 |
| VIT_07s0005g01950.t01 | Wine grape | nucleus | 46.98 | 40.07 |
| CDX74303 | Canola | nucleus | 34.91 | 38.94 |
| CDY44433 | Canola | nucleus | 38.79 | 38.79 |
| CDX86471 | Canola | nucleus | 38.79 | 38.79 |
| CDY20036 | Canola | nucleus | 38.79 | 38.79 |
| CDY00146 | Canola | nucleus | 27.59 | 38.55 |
| KRH31760 | Soybean | nucleus | 46.55 | 38.3 |
| CDY33891 | Canola | nucleus | 51.29 | 37.42 |
| CDY05611 | Canola | nucleus | 51.29 | 37.42 |
| CDY24688 | Canola | nucleus | 48.71 | 35.42 |
| CDY69488 | Canola | nucleus | 42.24 | 35.38 |
| CDY05270 | Canola | nucleus | 48.71 | 35.09 |
| CDY69953 | Canola | nucleus | 42.24 | 34.75 |
| CDY42115 | Canola | nucleus | 41.38 | 34.66 |
| CDX99864 | Canola | nucleus | 47.41 | 34.38 |
| CDY34949 | Canola | nucleus | 47.41 | 34.38 |
| CDX84981 | Canola | nucleus | 42.24 | 34.03 |
| CDX96033 | Canola | nucleus | 40.95 | 33.45 |
| CDY03859 | Canola | nucleus | 41.38 | 33.45 |
| CDY01906 | Canola | nucleus | 40.95 | 33.33 |
| CDY54094 | Canola | nucleus | 40.52 | 32.98 |
| CDX80230 | Canola | nucleus | 33.62 | 32.91 |
| CDY49581 | Canola | nucleus | 33.62 | 32.91 |
| CDY70282 | Canola | nucleus | 41.38 | 32.65 |
| CDY12705 | Canola | nucleus | 40.09 | 32.63 |
| CDY70097 | Canola | nucleus | 33.19 | 32.63 |
| CDX71075 | Canola | nucleus | 33.62 | 32.37 |
| CDX88722 | Canola | nucleus | 32.76 | 31.41 |
| CDX77436 | Canola | nucleus | 33.62 | 30.0 |
| CDY61190 | Canola | nucleus | 33.19 | 29.5 |
| CDX78153 | Canola | nucleus | 30.6 | 28.98 |
| CDX73572 | Canola | nucleus | 30.6 | 28.98 |
| CDX94829 | Canola | nucleus | 34.05 | 28.94 |
| CDX86041 | Canola | nucleus | 34.48 | 28.78 |
| CDX86040 | Canola | nucleus | 34.48 | 28.78 |
| CDX99125 | Canola | nucleus | 34.48 | 28.78 |
| CDY49231 | Canola | nucleus | 33.19 | 28.73 |
| CDX93006 | Canola | nucleus | 33.62 | 28.47 |
| CDX67561 | Canola | nucleus | 29.31 | 28.33 |
| CDY13311 | Canola | nucleus | 29.74 | 28.28 |
| CDY64694 | Canola | nucleus | 33.19 | 28.1 |
| CDY45895 | Canola | nucleus | 29.74 | 26.85 |
| CDX74100 | Canola | nucleus | 38.79 | 26.71 |
| CDY00083 | Canola | nucleus | 30.6 | 26.3 |
| CDY19978 | Canola | nucleus | 30.17 | 26.22 |
| CDX85285 | Canola | nucleus | 30.17 | 25.93 |
| CDX86354 | Canola | nucleus | 29.74 | 25.75 |
| CDY35782 | Canola | nucleus | 17.67 | 20.0 |
| CDY58600 | Canola | nucleus | 23.71 | 17.03 |
| HORVU5Hr1G022710.1 | Barley | cytosol, nucleus | 0.43 | 1.45 |
| CDX86221 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX95420 | EnsemblPlantsGene:GSBRNA2T00101158001 | Gene3D:1.10.10.60 | GO:A0A078E171 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF953 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX95420 | ProteinID:CDX95420.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE38FA | MapMan:15.5.2.1 | : | : |
Description
BnaC04g27380D
Coordinates
chrLK031888:-:1346325..1347261
Molecular Weight (calculated)
26636.1 Da
IEP (calculated)
7.237
GRAVY (calculated)
-0.863
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDYERNSNS PAHEEDSDVR KGPWTEEEDA ILVNFVSIHG DARWNHIARS SGLKRTGKSC RLRWLNYLRP DVRRGNITLE EQLMILKLHS LWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KQAKHLRCDV NSNLFKETMK NVWMPRLVER INAQTPSPTY EQVESMVTDP SQSIDEPSPV EPGFVQFNRN HHCHQQQFVP
201: ASDVSATSSN SPAETSGGAT LLRGGSTDPC DF
101: QYLPGRTDNE IKNYWRTRVQ KQAKHLRCDV NSNLFKETMK NVWMPRLVER INAQTPSPTY EQVESMVTDP SQSIDEPSPV EPGFVQFNRN HHCHQQQFVP
201: ASDVSATSSN SPAETSGGAT LLRGGSTDPC DF
001: MEDYERINSN SPTHEEDSDV RKGPWTEEED AILVNFVSIH GDARWNHIAR SSGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQFMILKLH SLWGNRWSKI
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
Arabidopsis Description
ATMYB2ATMYB2 [Source:UniProtKB/TrEMBL;Acc:Q39028]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.