Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05611 | Canola | nucleus | 71.43 | 15.72 |
| CDY33891 | Canola | nucleus | 71.43 | 15.72 |
| CDY24688 | Canola | nucleus | 60.0 | 13.17 |
| CDY05270 | Canola | nucleus | 58.57 | 12.73 |
| CDY70282 | Canola | nucleus | 52.86 | 12.59 |
| CDX99864 | Canola | nucleus | 57.14 | 12.5 |
| CDY34949 | Canola | nucleus | 57.14 | 12.5 |
| HORVU5Hr1G022710.1 | Barley | cytosol, nucleus | 11.43 | 11.59 |
| CDX74100 | Canola | nucleus | 52.86 | 10.98 |
| CDY37512 | Canola | nucleus | 20.0 | 6.97 |
| CDY49063 | Canola | nucleus | 20.0 | 6.76 |
| CDX85422 | Canola | nucleus | 15.71 | 6.01 |
| CDX91944 | Canola | nucleus | 15.71 | 5.31 |
| CDX74303 | Canola | nucleus | 14.29 | 4.81 |
| CDY00146 | Canola | nucleus | 10.0 | 4.22 |
| CDY27504 | Canola | nucleus | 15.71 | 4.04 |
| VIT_07s0005g01950.t01 | Wine grape | nucleus | 15.71 | 4.04 |
| CDX86220 | Canola | nucleus | 10.0 | 3.63 |
| CDX86041 | Canola | nucleus | 14.29 | 3.6 |
| CDX99125 | Canola | nucleus | 14.29 | 3.6 |
| CDY70097 | Canola | nucleus | 11.43 | 3.39 |
| CDX71075 | Canola | nucleus | 11.43 | 3.32 |
| CDX88722 | Canola | nucleus | 11.43 | 3.31 |
| CDX86040 | Canola | nucleus | 12.86 | 3.24 |
| CDY44433 | Canola | nucleus | 10.0 | 3.02 |
| CDY20036 | Canola | nucleus | 10.0 | 3.02 |
| CDY49581 | Canola | nucleus | 10.0 | 2.95 |
| CDX80230 | Canola | nucleus | 10.0 | 2.95 |
| CDY69488 | Canola | nucleus | 11.43 | 2.89 |
| CDY69953 | Canola | nucleus | 11.43 | 2.84 |
| CDX96033 | Canola | nucleus | 11.43 | 2.82 |
| CDY01906 | Canola | nucleus | 11.43 | 2.81 |
| CDY03859 | Canola | nucleus | 11.43 | 2.79 |
| CDX84981 | Canola | nucleus | 11.43 | 2.78 |
| CDX86471 | Canola | nucleus | 8.57 | 2.59 |
| CDY42115 | Canola | nucleus | 10.0 | 2.53 |
| CDY58600 | Canola | nucleus | 11.43 | 2.48 |
| CDY54094 | Canola | nucleus | 10.0 | 2.46 |
| CDY12705 | Canola | nucleus | 10.0 | 2.46 |
| CDY35782 | Canola | nucleus | 5.71 | 1.95 |
| CDY58599 | Canola | nucleus | 2.86 | 1.89 |
| CDX67561 | Canola | nucleus | 5.71 | 1.67 |
| CDY45895 | Canola | nucleus | 5.71 | 1.56 |
| CDX77436 | Canola | nucleus | 5.71 | 1.54 |
| CDY19978 | Canola | nucleus | 5.71 | 1.5 |
| CDX86354 | Canola | nucleus | 5.71 | 1.49 |
| CDY00083 | Canola | nucleus | 5.71 | 1.48 |
| CDX85285 | Canola | nucleus | 5.71 | 1.48 |
| CDY64694 | Canola | nucleus | 5.71 | 1.46 |
| CDY13311 | Canola | nucleus | 4.29 | 1.23 |
| CDX78153 | Canola | nucleus | 4.29 | 1.22 |
| CDX73572 | Canola | nucleus | 4.29 | 1.22 |
| CDY61190 | Canola | nucleus | 4.29 | 1.15 |
| CDY49231 | Canola | nucleus | 4.29 | 1.12 |
| CDX94829 | Canola | nucleus | 4.29 | 1.1 |
| CDX93006 | Canola | nucleus | 4.29 | 1.09 |
| CDX80085 | Canola | nucleus | 0.0 | 0.0 |
| CDX95420 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX86221 | EnsemblPlantsGene:GSBRNA2T00144316001 | ProteinID:CDX86221 | ProteinID:CDX86221.1 | SEG:seg | UniParc:UPI0004EE3B88 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA06g29380D
Coordinates
chrLK031845:+:439596..439808
Molecular Weight (calculated)
7949.2 Da
IEP (calculated)
3.375
GRAVY (calculated)
-0.584
Length
70 amino acids
Sequence
(BLAST)
(BLAST)
1: MLPSQNYLDD KSGLLNGGLG AMQEQSYPNL FENINGMIPS YSDSFWNIGS DEDFWLLQQQ QQQLLNNGSF
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NSNEFDHKFS SSCEDRWSKI AQYLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSQQFKDTM KYLWMPRLVE RIQAASIGSV SMSSCVTTSS DQFVINNNNT
201: NNVDNLALMS NPNGYITPDN SSVAVSPVSD LTECQVSSEV WKIGQDENLV DPKMTSPNYM DNSSGLLNGD FTKMQDQSDL NWFENINGMV PNYSDSFWNI
301: GNDEDFWLLQ QHQQVHDNGS F
101: NSNEFDHKFS SSCEDRWSKI AQYLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSQQFKDTM KYLWMPRLVE RIQAASIGSV SMSSCVTTSS DQFVINNNNT
201: NNVDNLALMS NPNGYITPDN SSVAVSPVSD LTECQVSSEV WKIGQDENLV DPKMTSPNYM DNSSGLLNGD FTKMQDQSDL NWFENINGMV PNYSDSFWNI
301: GNDEDFWLLQ QHQQVHDNGS F
Arabidopsis Description
AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.