Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G020370.2 | |
| HORVU2Hr1G096810.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47190.1 | HORVU2Hr1G096810.5 | AT1G63650.1 | 12056412 |
| AT2G47190.1 | HORVU1Hr1G020370.2 | AT4G09820.1 | 18532977 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G022690.1 | Barley | nucleus | 98.55 | 24.11 |
| CDX86221 | Canola | nucleus | 11.59 | 11.43 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 44.93 | 10.58 |
| VIT_07s0005g01950.t01 | Wine grape | nucleus | 14.49 | 3.68 |
| HORVU1Hr1G089770.2 | Barley | nucleus | 14.49 | 3.41 |
| Bra004473.1-P | Field mustard | nucleus | 13.04 | 3.27 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 15.94 | 2.98 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 14.49 | 2.75 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 13.04 | 2.72 |
| AT2G47190.1 | Thale cress | nucleus | 10.14 | 2.56 |
| KRH31760 | Soybean | nucleus | 10.14 | 2.48 |
| HORVU3Hr1G056980.1 | Barley | nucleus | 7.25 | 2.36 |
| HORVU2Hr1G087990.1 | Barley | nucleus | 8.7 | 2.32 |
| HORVU6Hr1G057670.3 | Barley | nucleus | 8.7 | 2.22 |
| Bra021389.1-P | Field mustard | nucleus | 8.7 | 2.21 |
| CDY27504 | Canola | nucleus | 8.7 | 2.21 |
| HORVU5Hr1G021750.2 | Barley | nucleus | 7.25 | 2.11 |
| KRH69178 | Soybean | nucleus | 7.25 | 1.92 |
| KRH68301 | Soybean | nucleus | 7.25 | 1.88 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 8.7 | 1.85 |
| KRH31759 | Soybean | nucleus | 5.8 | 1.69 |
| HORVU1Hr1G008810.3 | Barley | nucleus | 5.8 | 1.55 |
| KRG96561 | Soybean | nucleus | 5.8 | 1.54 |
| HORVU4Hr1G084360.3 | Barley | nucleus | 5.8 | 1.49 |
| HORVU3Hr1G004050.1 | Barley | nucleus | 7.25 | 1.42 |
| KRH68299 | Soybean | nucleus | 4.35 | 1.27 |
| KRG96563 | Soybean | nucleus | 2.9 | 0.84 |
| CDX80085 | Canola | nucleus | 1.45 | 0.5 |
| CDX95420 | Canola | nucleus | 1.45 | 0.43 |
| KRH18107 | Soybean | nucleus | 0.0 | 0.0 |
| KRH49797 | Soybean | nucleus | 0.0 | 0.0 |
| HORVU0Hr1G005100.1 | Barley | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G022710.1 | EnsemblPlantsGene:HORVU5Hr1G022710 | UniParc:UPI000B4764EF | UniProt:A0A287QMT4 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr5H:-:116461329..116461641
Molecular Weight (calculated)
7896.9 Da
IEP (calculated)
3.700
GRAVY (calculated)
-0.646
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: FGARCANASV GEMIHGGDWV QEQNQGFWPE PNQTFQLQDS ELSGWVQGFS ESESLAENFW SLEDIWKMQ
001: MAKRIHLTEL GCIACEELTE LGAGKEGWLV NNPNLLSALD SHSLALANRF LILIVNWGDP DAPRVKIRPD LSPIEAESIT AIEWLVFDDV RVVVAGTSCG
101: YLLVYSVTGD LIHKQIVHQS RILKIRVRGT KKDLMQETSS EEICIVLPGV IARFDGSNIQ SMVQKWVQEK NSNFWDQKNR KGDAEDTGSL YQRLPYQIWN
201: VNKNGVCVDA TVTGVMPPPL LELQSSQRYY CAVTIGEDSV ISAYRLSEDR GRSLVGAILS KVVPAAASTI ASFSKLIWRS NDQSPKRKPE AKTQSFARAS
301: SLTCIKDYPR KGEKLTLSPS GTLAAITDSL GRILLLDTQA LVVVRLWKGY RDASCVFMEM LAKKDKGKSV IHTEPVKSDY CLCLAIHAPR KGIIEVWQMR
401: TGPRLLTIQC AKGSKLLQPA YRFGSNSSSS PYIPLEVFLL NGDSGQVSML NRSLS
101: YLLVYSVTGD LIHKQIVHQS RILKIRVRGT KKDLMQETSS EEICIVLPGV IARFDGSNIQ SMVQKWVQEK NSNFWDQKNR KGDAEDTGSL YQRLPYQIWN
201: VNKNGVCVDA TVTGVMPPPL LELQSSQRYY CAVTIGEDSV ISAYRLSEDR GRSLVGAILS KVVPAAASTI ASFSKLIWRS NDQSPKRKPE AKTQSFARAS
301: SLTCIKDYPR KGEKLTLSPS GTLAAITDSL GRILLLDTQA LVVVRLWKGY RDASCVFMEM LAKKDKGKSV IHTEPVKSDY CLCLAIHAPR KGIIEVWQMR
401: TGPRLLTIQC AKGSKLLQPA YRFGSNSSSS PYIPLEVFLL NGDSGQVSML NRSLS
Arabidopsis Description
At3g14910 [Source:UniProtKB/TrEMBL;Acc:Q9LKB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.