Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95420 | Canola | nucleus | 73.26 | 86.21 |
| Bra004473.1-P | Field mustard | nucleus | 86.45 | 85.82 |
| CDY27504 | Canola | nucleus | 83.88 | 84.19 |
| Bra021389.1-P | Field mustard | nucleus | 83.15 | 83.46 |
| CDX80085 | Canola | nucleus | 60.81 | 83.42 |
| KRH68299 | Soybean | nucleus | 42.49 | 48.95 |
| AT1G48000.1 | Thale cress | nucleus | 42.12 | 47.33 |
| KRG96561 | Soybean | nucleus | 42.86 | 45.0 |
| KRH69178 | Soybean | nucleus | 41.76 | 43.85 |
| VIT_07s0005g01950.t01 | Wine grape | nucleus | 43.59 | 43.75 |
| AT3G01530.1 | Thale cress | nucleus | 32.23 | 42.72 |
| KRH31760 | Soybean | nucleus | 43.59 | 42.2 |
| AT3G27810.1 | Thale cress | nucleus | 34.43 | 41.59 |
| AT5G40350.1 | Thale cress | nucleus | 31.87 | 40.65 |
| AT5G49620.2 | Thale cress | nucleus | 46.89 | 39.88 |
| AT3G06490.1 | Thale cress | nucleus | 46.52 | 39.32 |
| AT1G68320.1 | Thale cress | nucleus | 38.1 | 36.36 |
| AT5G59780.3 | Thale cress | nucleus | 29.3 | 34.04 |
| AT3G46130.1 | Thale cress | nucleus | 30.77 | 32.56 |
| AT1G25340.3 | Thale cress | nucleus | 36.63 | 32.47 |
| AT3G24310.1 | Thale cress | nucleus | 30.77 | 31.23 |
| AT3G53200.1 | Thale cress | nucleus | 27.11 | 31.09 |
| AT4G13480.1 | Thale cress | nucleus | 28.21 | 29.5 |
| AT3G30210.1 | Thale cress | nucleus | 27.47 | 27.17 |
| HORVU5Hr1G022710.1 | Barley | cytosol, nucleus | 2.56 | 10.14 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:819332 | UniProt:A0A178VX63 | ProteinID:AAB63819.1 | ProteinID:AEC10812.1 |
| EMBL:AK229140 | ArrayExpress:AT2G47190 | EnsemblPlantsGene:AT2G47190 | RefSeq:AT2G47190 | TAIR:AT2G47190 | RefSeq:AT2G47190-TAIR-G |
| EnsemblPlants:AT2G47190.1 | TAIR:AT2G47190.1 | Symbol:ATMYB2 | EMBL:AY519579 | ProteinID:BAA03534.1 | ProteinID:BAB62128.1 |
| EMBL:BT010949 | EMBL:BT011656 | GO:GO:0000978 | GO:GO:0000981 | GO:GO:0001046 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005516 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006357 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009414 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009723 |
| GO:GO:0009737 | GO:GO:0009751 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0016036 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0045893 | GO:GO:0046686 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| RefSeq:NP_182241.1 | ProteinID:OAP10937.1 | PFAM:PF00249 | PO:PO:0000293 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009047 | PO:PO:0025281 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF953 | UniProt:Q39028 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI00000A4CE9 | : | : | : | : | : |
Description
ATMYB2ATMYB2 [Source:UniProtKB/TrEMBL;Acc:Q39028]
Coordinates
chr2:+:19375985..19377543
Molecular Weight (calculated)
31449.4 Da
IEP (calculated)
5.199
GRAVY (calculated)
-0.812
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDYERINSN SPTHEEDSDV RKGPWTEEED AILVNFVSIH GDARWNHIAR SSGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQFMILKLH SLWGNRWSKI
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.