Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47190.1 | KRG95511 | AT4G09820.1 | 18532977 |
| AT2G47190.1 | KRH32008 | AT4G09820.1 | 18532977 |
| AT2G47190.1 | KRH67189 | AT4G09820.1 | 18532977 |
| AT2G47190.1 | KRH71432 | AT4G09820.1 | 18532977 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96561 | Soybean | nucleus | 89.03 | 81.15 |
| KRG94092 | Soybean | nucleus | 23.63 | 62.92 |
| KRH69178 | Soybean | nucleus | 68.35 | 62.31 |
| KRH55348 | Soybean | nucleus | 31.22 | 59.68 |
| KRH11843 | Soybean | nucleus | 30.8 | 58.87 |
| KRH62917 | Soybean | nucleus | 25.74 | 58.65 |
| KRH33348 | Soybean | nucleus | 24.89 | 57.84 |
| KRH31759 | Soybean | nucleus | 56.12 | 56.36 |
| KRH31760 | Soybean | nucleus | 65.4 | 54.96 |
| KRH18107 | Soybean | nucleus | 29.11 | 54.76 |
| KRH75688 | Soybean | nucleus | 24.89 | 54.63 |
| KRH49797 | Soybean | nucleus | 31.65 | 51.72 |
| VIT_07s0005g01950.t01 | Wine grape | nucleus | 55.7 | 48.53 |
| CDX95420 | Canola | nucleus | 45.99 | 46.98 |
| KRG96563 | Soybean | nucleus | 45.99 | 45.8 |
| KRH07188 | Soybean | nucleus | 39.24 | 44.71 |
| KRG94086 | Soybean | nucleus | 38.4 | 44.17 |
| KRH56587 | Soybean | nucleus | 37.97 | 43.69 |
| KRG93265 | Soybean | nucleus | 37.55 | 43.41 |
| KRH68301 | Soybean | nucleus | 48.52 | 43.23 |
| AT2G47190.1 | Thale cress | nucleus | 48.95 | 42.49 |
| CDY27504 | Canola | nucleus | 48.52 | 42.28 |
| Bra021389.1-P | Field mustard | nucleus | 48.52 | 42.28 |
| Bra004473.1-P | Field mustard | nucleus | 47.68 | 41.09 |
| CDX80085 | Canola | nucleus | 34.18 | 40.7 |
| KRH02414 | Soybean | nucleus | 50.63 | 37.27 |
| KRH50671 | Soybean | nucleus | 50.21 | 36.62 |
| KRG97314 | Soybean | nucleus | 52.32 | 36.36 |
| KRH36928 | Soybean | nucleus | 51.9 | 36.18 |
| KRG90844 | Soybean | nucleus | 44.3 | 34.2 |
| KRH35934 | Soybean | nucleus | 43.88 | 33.77 |
| KRG90311 | Soybean | nucleus | 35.87 | 32.69 |
| KRH04452 | Soybean | nucleus | 36.29 | 32.45 |
| KRG92245 | Soybean | nucleus | 33.76 | 31.5 |
| KRH41648 | Soybean | nucleus | 40.93 | 31.09 |
| KRH60346 | Soybean | nucleus | 41.35 | 30.91 |
| KRH34553 | Soybean | nucleus | 34.6 | 30.83 |
| KRH39173 | Soybean | nucleus | 38.82 | 29.68 |
| KRH24842 | Soybean | nucleus | 32.91 | 29.32 |
| KRH48497 | Soybean | nucleus | 38.4 | 29.26 |
| KRH01379 | Soybean | nucleus | 31.65 | 29.07 |
| KRH10298 | Soybean | nucleus | 31.22 | 29.02 |
| KRH29850 | Soybean | nucleus | 32.49 | 28.95 |
| KRH19953 | Soybean | nucleus | 27.43 | 28.38 |
| KRH23019 | Soybean | nucleus | 31.22 | 28.03 |
| KRH32555 | Soybean | nucleus | 27.43 | 28.02 |
| KRH33568 | Soybean | nucleus | 36.71 | 27.19 |
| KRH45095 | Soybean | nucleus | 29.96 | 25.82 |
| KRH01378 | Soybean | nucleus | 30.38 | 25.81 |
| HORVU5Hr1G022710.1 | Barley | cytosol, nucleus | 1.27 | 4.35 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:547458 | EMBL:ACUP02002106 | ProteinID:BAH83498.1 | UniProt:C5NU12 |
| EnsemblPlantsGene:GLYMA_03G221700 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | EnsemblPlants:KRH68299 |
| ProteinID:KRH68299 | ProteinID:KRH68299.1 | EMBL:KT921220 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF494 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001AACE7D |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:42472204..42474070
Molecular Weight (calculated)
27030.7 Da
IEP (calculated)
9.168
GRAVY (calculated)
-0.617
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MERSSEEEML ITKGPWTEQE DSLLFNYITV HGEGHWNSVA RYTGLKRTGK SCRLRWLNYL RPNVRRGNIT LQEQLLILDL HSRWGNRWSK IAEHLPGRTD
101: NEIKNYWRTR VVKQAKQLKC DVNSKQFRDT LRFVWMPRML ERIRAQASSS AQAHQSSLIS NSNTQAHSGL LSSALHAHAP SLSDSSASYN LMGADAGSCS
201: SHSYYSDIAG NGFGGADLWT DQNICFLQHQ LAHHDLF
101: NEIKNYWRTR VVKQAKQLKC DVNSKQFRDT LRFVWMPRML ERIRAQASSS AQAHQSSLIS NSNTQAHSGL LSSALHAHAP SLSDSSASYN LMGADAGSCS
201: SHSYYSDIAG NGFGGADLWT DQNICFLQHQ LAHHDLF
001: MEDYERINSN SPTHEEDSDV RKGPWTEEED AILVNFVSIH GDARWNHIAR SSGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQFMILKLH SLWGNRWSKI
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
101: AQYLPGRTDN EIKNYWRTRV QKQAKHLRCD VNSNLFKETM RNVWMPRLVE RINAQSLPTT CEQVESMITD PSQPVNEPSP VEPGFVQFSQ NHHQQFVPAT
201: ELSATSSNSP AETFSDVRGG VVNGSGYDPS GQTGFGEFND WGCVGGDNMW TDEESFWFLQ DQFCPDTTSY SYN
Arabidopsis Description
ATMYB2ATMYB2 [Source:UniProtKB/TrEMBL;Acc:Q39028]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.