Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47190.1 | KRG95511 | AT4G09820.1 | 18532977 |
| AT2G47190.1 | KRH32008 | AT4G09820.1 | 18532977 |
| AT2G47190.1 | KRH67189 | AT4G09820.1 | 18532977 |
| AT2G47190.1 | KRH71432 | AT4G09820.1 | 18532977 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH69178 | Soybean | nucleus | 77.31 | 83.85 |
| KRG94092 | Soybean | nucleus | 21.28 | 67.42 |
| KRH68299 | Soybean | nucleus | 54.96 | 65.4 |
| KRG96561 | Soybean | nucleus | 59.22 | 64.23 |
| KRH55348 | Soybean | nucleus | 26.95 | 61.29 |
| KRH11843 | Soybean | nucleus | 26.6 | 60.48 |
| KRH62917 | Soybean | nucleus | 21.99 | 59.62 |
| KRH33348 | Soybean | nucleus | 20.92 | 57.84 |
| KRH31759 | Soybean | nucleus | 47.16 | 56.36 |
| KRH75688 | Soybean | nucleus | 21.28 | 55.56 |
| KRH18107 | Soybean | nucleus | 23.76 | 53.17 |
| KRG96563 | Soybean | nucleus | 41.84 | 49.58 |
| KRH49797 | Soybean | nucleus | 25.18 | 48.97 |
| VIT_07s0005g01950.t01 | Wine grape | nucleus | 45.74 | 47.43 |
| KRH68301 | Soybean | nucleus | 43.97 | 46.62 |
| CDX95420 | Canola | nucleus | 38.3 | 46.55 |
| KRH07188 | Soybean | nucleus | 34.04 | 46.15 |
| KRH56587 | Soybean | nucleus | 33.33 | 45.63 |
| KRG93265 | Soybean | nucleus | 32.98 | 45.37 |
| KRG94086 | Soybean | nucleus | 32.98 | 45.15 |
| AT2G47190.1 | Thale cress | nucleus | 42.2 | 43.59 |
| CDY27504 | Canola | nucleus | 41.13 | 42.65 |
| Bra021389.1-P | Field mustard | nucleus | 41.13 | 42.65 |
| Bra004473.1-P | Field mustard | nucleus | 40.78 | 41.82 |
| KRH02414 | Soybean | nucleus | 46.45 | 40.68 |
| KRH50671 | Soybean | nucleus | 46.81 | 40.62 |
| CDX80085 | Canola | nucleus | 28.01 | 39.7 |
| KRG97314 | Soybean | nucleus | 46.1 | 38.12 |
| KRH36928 | Soybean | nucleus | 45.74 | 37.94 |
| KRG90844 | Soybean | nucleus | 38.3 | 35.18 |
| KRH35934 | Soybean | nucleus | 38.3 | 35.06 |
| KRG90311 | Soybean | nucleus | 30.14 | 32.69 |
| KRH41648 | Soybean | nucleus | 36.17 | 32.69 |
| KRG92245 | Soybean | nucleus | 29.43 | 32.68 |
| KRH60346 | Soybean | nucleus | 36.52 | 32.49 |
| KRH04452 | Soybean | nucleus | 29.79 | 31.7 |
| KRH34553 | Soybean | nucleus | 29.79 | 31.58 |
| KRH39173 | Soybean | nucleus | 32.27 | 29.35 |
| KRH19953 | Soybean | nucleus | 23.76 | 29.26 |
| KRH32555 | Soybean | nucleus | 23.76 | 28.88 |
| KRH10298 | Soybean | nucleus | 25.89 | 28.63 |
| KRH01379 | Soybean | nucleus | 25.89 | 28.29 |
| KRH23019 | Soybean | nucleus | 26.24 | 28.03 |
| KRH29850 | Soybean | nucleus | 26.24 | 27.82 |
| KRH48497 | Soybean | nucleus | 30.5 | 27.65 |
| KRH24842 | Soybean | nucleus | 25.89 | 27.44 |
| KRH33568 | Soybean | nucleus | 30.14 | 26.56 |
| KRH01378 | Soybean | nucleus | 23.76 | 24.01 |
| KRH45095 | Soybean | nucleus | 23.4 | 24.0 |
| HORVU5Hr1G022710.1 | Barley | cytosol, nucleus | 2.48 | 10.14 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100777932 | MapMan:15.5.2.1 | EMBL:ACUP02006084 | EnsemblPlantsGene:GLYMA_10G010400 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | UniProt:I1L7M4 | InterPro:IPR017930 | EnsemblPlants:KRH31760 | ProteinID:KRH31760 |
| ProteinID:KRH31760.1 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF494 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000233C37C | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr10:+:983901..985551
Molecular Weight (calculated)
32320.5 Da
IEP (calculated)
4.835
GRAVY (calculated)
-0.693
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTISVQAMR SLSDSDSLSS ATYASEEDMK IKKGPWTEEE DSVLINYVNF QGEGQWNSLA RSAGLKRTGK SCRLRWLNYL RPNVRRGNIT LQEQLLILEL
101: HSRWGNRWAK IAEELGGRTD NEIKNYWRTR VVKQAKQLKC DVNSKQFRDT VRFVWMPRLM EQIQASFRIV PSDSSHGLDQ TTLCNTQQTE SSTDANPTMF
201: CDNSMVSSYS SEVDLQPLSL SDTSTTSSSE SAEKKESISS SLWQQWDYSD LQAFEPCNGF GDADLWTDEN IWFLQQHLAD HL
101: HSRWGNRWAK IAEELGGRTD NEIKNYWRTR VVKQAKQLKC DVNSKQFRDT VRFVWMPRLM EQIQASFRIV PSDSSHGLDQ TTLCNTQQTE SSTDANPTMF
201: CDNSMVSSYS SEVDLQPLSL SDTSTTSSSE SAEKKESISS SLWQQWDYSD LQAFEPCNGF GDADLWTDEN IWFLQQHLAD HL
001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
Arabidopsis Description
MYB112MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q94CJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.