Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58599 | Canola | nucleus | 27.92 | 81.13 |
| CDY42115 | Canola | nucleus | 69.16 | 76.9 |
| Bra024760.1-P | Field mustard | nucleus | 66.23 | 76.69 |
| Bra012482.1-P | Field mustard | nucleus | 69.48 | 75.35 |
| CDX84981 | Canola | nucleus | 69.81 | 74.65 |
| CDY03859 | Canola | nucleus | 69.48 | 74.56 |
| GSMUA_Achr3P01370_001 | Banana | nucleus | 27.92 | 69.35 |
| AT1G68320.1 | Thale cress | nucleus | 54.55 | 58.74 |
| GSMUA_Achr10P... | Banana | nucleus | 31.17 | 54.86 |
| GSMUA_Achr1P21020_001 | Banana | nucleus | 31.82 | 50.26 |
| GSMUA_Achr8P18460_001 | Banana | nucleus | 34.42 | 42.57 |
| PGSC0003DMT400014383 | Potato | nucleus | 38.31 | 42.45 |
| Solyc03g119370.1.1 | Tomato | nucleus | 38.31 | 42.14 |
| AT1G48000.1 | Thale cress | nucleus | 32.14 | 40.74 |
| AT3G27810.1 | Thale cress | nucleus | 29.55 | 40.27 |
| AT5G40350.1 | Thale cress | nucleus | 27.6 | 39.72 |
| VIT_01s0011g03730.t01 | Wine grape | nucleus | 37.01 | 39.58 |
| AT3G01530.1 | Thale cress | nucleus | 25.97 | 38.84 |
| KRG90844 | Soybean | nucleus | 38.64 | 38.76 |
| KRH35934 | Soybean | nucleus | 37.66 | 37.66 |
| GSMUA_Achr2P22640_001 | Banana | nucleus | 35.06 | 36.99 |
| GSMUA_Achr3P21060_001 | Banana | nucleus | 36.36 | 36.96 |
| AT2G47190.1 | Thale cress | nucleus | 32.47 | 36.63 |
| GSMUA_Achr6P09760_001 | Banana | nucleus | 35.71 | 35.71 |
| AT5G59780.3 | Thale cress | nucleus | 26.3 | 34.47 |
| GSMUA_Achr11P... | Banana | nucleus | 35.06 | 34.29 |
| AT4G13480.1 | Thale cress | nucleus | 27.92 | 32.95 |
| AT3G46130.1 | Thale cress | nucleus | 27.6 | 32.95 |
| AT5G49620.2 | Thale cress | nucleus | 33.12 | 31.78 |
| TraesCS3D01G036200.1 | Wheat | nucleus | 35.06 | 31.4 |
| AT3G24310.1 | Thale cress | nucleus | 27.27 | 31.23 |
| TraesCS3A01G044700.1 | Wheat | nucleus | 35.06 | 31.21 |
| Os01t0128000-01 | Rice | nucleus | 35.39 | 31.14 |
| HORVU3Hr1G004050.1 | Barley | nucleus | 35.39 | 31.05 |
| Zm00001d008528_P001 | Maize | nucleus | 36.36 | 30.94 |
| TraesCS3B01G039100.1 | Wheat | nucleus | 35.06 | 30.77 |
| Zm00001d040019_P001 | Maize | nucleus | 36.04 | 30.66 |
| AT3G06490.1 | Thale cress | nucleus | 32.14 | 30.65 |
| AT3G53200.1 | Thale cress | nucleus | 22.4 | 28.99 |
| EES00381 | Sorghum | nucleus | 36.36 | 28.79 |
| AT3G30210.1 | Thale cress | nucleus | 24.35 | 27.17 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:839118 | UniProt:A0A1P8ARZ7 | ProteinID:ANM59397.1 | ArrayExpress:AT1G25340 |
| EnsemblPlantsGene:AT1G25340 | RefSeq:AT1G25340 | TAIR:AT1G25340 | RefSeq:AT1G25340-TAIR-G | EnsemblPlants:AT1G25340.3 | Unigene:At.16925 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| Symbol:MYB116 | InterPro:Myb_dom | RefSeq:NP_001321760.1 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF510 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000848B6CB | SEG:seg |
Description
MYB116myb domain protein 116 [Source:TAIR;Acc:AT1G25340]
Coordinates
chr1:+:8885210..8886777
Molecular Weight (calculated)
35621.2 Da
IEP (calculated)
6.264
GRAVY (calculated)
-0.636
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNITKKKCN GNEEGAEQRK GPWTLEEDTL LTNYISHNGE GRWNLLAKSS GKSCRLRWLN YLKPDIKRGN LTPQEQLLIL ELHSKWGNRW SKISKYLPGR
101: TDNDIKNYWR TRVQKQARQL NIDSNSHKFI EVVRSFWFPR LINEIKDNSY TNNIKANAPD LLGPILRDSK DLGFNNMDCS TSMSEDLKKT SQFMDFSDLE
201: TTMSLEGSRG GSSQCVSEVY SSFPCLEEEY MVAVMGSSDI SALHDCHVAD SKYEDDVTQD LMWNMDDIWQ FNEKILIFED QTVLVLVSLD LLRRTNLISL
301: LHVKESKR
101: TDNDIKNYWR TRVQKQARQL NIDSNSHKFI EVVRSFWFPR LINEIKDNSY TNNIKANAPD LLGPILRDSK DLGFNNMDCS TSMSEDLKKT SQFMDFSDLE
201: TTMSLEGSRG GSSQCVSEVY SSFPCLEEEY MVAVMGSSDI SALHDCHVAD SKYEDDVTQD LMWNMDDIWQ FNEKILIFED QTVLVLVSLD LLRRTNLISL
301: LHVKESKR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.