Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g119370.1.1 | Tomato | nucleus | 93.17 | 92.5 |
| GSMUA_Achr3P01370_001 | Banana | nucleus | 35.61 | 79.84 |
| GSMUA_Achr10P... | Banana | nucleus | 37.77 | 60.0 |
| CDY58599 | Canola | nucleus | 22.3 | 58.49 |
| GSMUA_Achr1P21020_001 | Banana | nucleus | 38.49 | 54.87 |
| PGSC0003DMT400037716 | Potato | nucleus | 45.68 | 46.52 |
| PGSC0003DMT400072687 | Potato | nucleus | 22.66 | 46.32 |
| GSMUA_Achr8P18460_001 | Banana | nucleus | 40.29 | 44.98 |
| Bra004297.1-P | Field mustard | nucleus | 45.68 | 44.72 |
| CDX96033 | Canola | nucleus | 45.68 | 44.72 |
| PGSC0003DMT400011745 | Potato | nucleus | 37.41 | 44.44 |
| CDY69488 | Canola | nucleus | 44.24 | 44.4 |
| CDY01906 | Canola | nucleus | 45.32 | 44.21 |
| PGSC0003DMT400001278 | Potato | nucleus | 32.73 | 43.96 |
| PGSC0003DMT400011750 | Potato | nucleus | 36.33 | 43.91 |
| AT1G68320.1 | Thale cress | nucleus | 44.96 | 43.71 |
| CDY69953 | Canola | nucleus | 43.88 | 43.26 |
| Bra004041.1-P | Field mustard | nucleus | 43.88 | 43.26 |
| Bra012482.1-P | Field mustard | nucleus | 43.88 | 42.96 |
| CDY03859 | Canola | nucleus | 43.88 | 42.51 |
| CDY42115 | Canola | nucleus | 42.09 | 42.24 |
| CDX84981 | Canola | nucleus | 43.53 | 42.01 |
| GSMUA_Achr2P22640_001 | Banana | nucleus | 43.88 | 41.78 |
| CDY12705 | Canola | nucleus | 42.81 | 41.75 |
| Bra033948.1-P | Field mustard | nucleus | 42.81 | 41.75 |
| CDY54094 | Canola | nucleus | 42.09 | 41.05 |
| PGSC0003DMT400040149 | Potato | nucleus | 31.65 | 40.37 |
| Bra024760.1-P | Field mustard | nucleus | 38.13 | 39.85 |
| GSMUA_Achr3P21060_001 | Banana | nucleus | 42.81 | 39.27 |
| GSMUA_Achr11P... | Banana | nucleus | 44.24 | 39.05 |
| GSMUA_Achr6P09760_001 | Banana | nucleus | 43.17 | 38.96 |
| AT1G25340.3 | Thale cress | nucleus | 42.45 | 38.31 |
| PGSC0003DMT400011748 | Potato | nucleus | 40.29 | 37.97 |
| PGSC0003DMT400022600 | Potato | nucleus | 40.29 | 37.71 |
| PGSC0003DMT400069841 | Potato | nucleus | 40.65 | 34.88 |
| PGSC0003DMT400069955 | Potato | nucleus | 28.42 | 34.5 |
| Zm00001d008528_P001 | Maize | nucleus | 43.53 | 33.43 |
| Zm00001d040019_P001 | Maize | nucleus | 43.17 | 33.15 |
| Os01t0128000-01 | Rice | nucleus | 41.73 | 33.14 |
| TraesCS3D01G036200.1 | Wheat | nucleus | 40.29 | 32.56 |
| TraesCS3A01G044700.1 | Wheat | nucleus | 40.29 | 32.37 |
| HORVU3Hr1G004050.1 | Barley | nucleus | 40.29 | 31.91 |
| TraesCS3B01G039100.1 | Wheat | nucleus | 40.29 | 31.91 |
| PGSC0003DMT400003796 | Potato | nucleus | 28.78 | 31.62 |
| EES00381 | Sorghum | nucleus | 44.24 | 31.62 |
| PGSC0003DMT400003479 | Potato | nucleus | 26.26 | 30.67 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102589612 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1A448 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400005641 | PGSC:PGSC0003DMG400005641 | EnsemblPlants:PGSC0003DMT400014383 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF510 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002961F39 | RefSeq:XP_006341595.1 | SEG:seg |
Description
MYB [Source:PGSC_GENE;Acc:PGSC0003DMG400005641]
Coordinates
chr3:-:58782540..58783899
Molecular Weight (calculated)
31880.1 Da
IEP (calculated)
7.128
GRAVY (calculated)
-0.802
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: METEMSFLSK SSSSSSSDDD IELRRGPWTI EEDKLLVHYI TNHGEGRWNM LAKHAGLKRT GKSCRLRWLN YLKPDVKRGN LTPQEQLLIL ELHSKLGNRW
101: SKIAQYLPGR TDNEIKNYWR TRVQKQARNL KIDSNSAAFQ EMIRSLWIPR LLQKIQSSSV PPSIQSSQSS TPPGFSTSTS SNSSSHSCSI YNSPKITSEC
201: PEITPRQIDD SDLNSFVKAH FPFDNSYDMD NFGQLATGNF NDVMDYDQMS GDQNKLTSDS FWSNMDEFFY QKTGYEQL
101: SKIAQYLPGR TDNEIKNYWR TRVQKQARNL KIDSNSAAFQ EMIRSLWIPR LLQKIQSSSV PPSIQSSQSS TPPGFSTSTS SNSSSHSCSI YNSPKITSEC
201: PEITPRQIDD SDLNSFVKAH FPFDNSYDMD NFGQLATGNF NDVMDYDQMS GDQNKLTSDS FWSNMDEFFY QKTGYEQL
001: MENSMKKKKS FKESEDEELR RGPWTLEEDT LLTNYILHNG EGRWNHVAKC AGLKRTGKSC RLRWLNYLKP DIRRGNLTPQ EQLLILELHS KWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTT YCCPQNNNNN SLLLPSQSHD SLSMQKDIDY SGFSNIDGSS
201: STSTCMSHLT TVPHFMDQSN TNIIDGSMCF HEGNVQEFGG YVPGMEDYMV NSDISMECHV ADGYSAYEDV TQDPMWNVDD IWQFRE
101: QYLPGRTDNE IKNYWRTRVQ KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTT YCCPQNNNNN SLLLPSQSHD SLSMQKDIDY SGFSNIDGSS
201: STSTCMSHLT TVPHFMDQSN TNIIDGSMCF HEGNVQEFGG YVPGMEDYMV NSDISMECHV ADGYSAYEDV TQDPMWNVDD IWQFRE
Arabidopsis Description
MYB62Transcription factor MYB62 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9G7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.