Factsheet for PGSC0003DMT400037716

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009230.1.1	Tomato	nucleus	94.14	93.8
GSMUA_Achr3P01370_001	Banana	nucleus	36.26	79.84
GSMUA_Achr10P...	Banana	nucleus	41.03	64.0
GSMUA_Achr1P21020_001	Banana	nucleus	40.29	56.41
GSMUA_Achr8P18460_001	Banana	nucleus	44.32	48.59
PGSC0003DMT400072687	Potato	nucleus	23.81	47.79
PGSC0003DMT400011745	Potato	nucleus	39.19	45.73
PGSC0003DMT400014383	Potato	nucleus	46.52	45.68
PGSC0003DMT400001278	Potato	nucleus	34.07	44.93
PGSC0003DMT400011750	Potato	nucleus	37.73	44.78
VIT_01s0011g03730.t01	Wine grape	nucleus	46.89	44.44
KRG90844	Soybean	nucleus	49.45	43.97
KRH35934	Soybean	nucleus	48.35	42.86
GSMUA_Achr2P22640_001	Banana	nucleus	45.05	42.12
GSMUA_Achr3P21060_001	Banana	nucleus	45.79	41.25
PGSC0003DMT400040149	Potato	nucleus	32.6	40.83
GSMUA_Achr6P09760_001	Banana	nucleus	44.32	39.29
GSMUA_Achr11P...	Banana	nucleus	45.05	39.05
PGSC0003DMT400069955	Potato	nucleus	32.23	38.43
PGSC0003DMT400022600	Potato	nucleus	41.76	38.38
Os01t0128000-01	Rice	nucleus	47.25	36.86
PGSC0003DMT400011748	Potato	nucleus	39.56	36.61
Zm00001d008528_P001	Maize	nucleus	46.89	35.36
PGSC0003DMT400069841	Potato	nucleus	41.76	35.19
TraesCS3D01G036200.1	Wheat	nucleus	43.96	34.88
TraesCS3A01G044700.1	Wheat	nucleus	43.96	34.68
HORVU3Hr1G004050.1	Barley	nucleus	44.32	34.47
Zm00001d040019_P001	Maize	nucleus	45.42	34.25
TraesCS3B01G039100.1	Wheat	nucleus	43.96	34.19
PGSC0003DMT400003479	Potato	nucleus	28.94	33.19
EES00381	Sorghum	nucleus	47.25	33.16
PGSC0003DMT400003796	Potato	nucleus	30.4	32.81

Protein Annotations

EnsemblPlants:PGSC0003DMT400037716	EnsemblPlantsGene:PGSC0003DMG400014550	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF510	PFAM:PF00249	PFscan:PS51294	PGSC:PGSC0003DMG400014550	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002961764	UniProt:M1B5S1	MapMan:15.5.2.1	:	:

Description

MYB transcription factor MYB84 [Source:PGSC_GENE;Acc:PGSC0003DMG400014550]

Coordinates

chr5:+:3010226..3011701

Molecular Weight (calculated)

31953.5 Da

IEP (calculated)

6.600

GRAVY (calculated)

-0.921

Length

273 amino acids

Sequence
(BLAST)

001: MSNDNNNNNL SNKDELFELR RGPWTLEEDN LLIHYISTHD EGRWNALAKC AGLKRTGKSC RLRWLNYLKP DIKRGNLTPQ EQLLILELHS KWGNRWSKIA
101: QHLPGRTDNE IKNYWRTRVQ KQARQLKVDS NSKKFVEAIK NLWVPRLLEK MEQCSSSSIE KKLPNLPLIN NNQEPCTKHN KSHDTNNNHN TTWGSLENSL
201: DSMNVLNENL NSILQDDECY HVGSFIQQPE HLTYQEMSIS ECEVAEANWL NDEGSLWNMD ELWQFKKLGD VDI

Best Arabidopsis Sequence Match ( AT1G68320.1 )
(BLAST)

001: MENSMKKKKS FKESEDEELR RGPWTLEEDT LLTNYILHNG EGRWNHVAKC AGLKRTGKSC RLRWLNYLKP DIRRGNLTPQ EQLLILELHS KWGNRWSKIA
101: QYLPGRTDNE IKNYWRTRVQ KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTT YCCPQNNNNN SLLLPSQSHD SLSMQKDIDY SGFSNIDGSS
201: STSTCMSHLT TVPHFMDQSN TNIIDGSMCF HEGNVQEFGG YVPGMEDYMV NSDISMECHV ADGYSAYEDV TQDPMWNVDD IWQFRE

Arabidopsis Description

MYB62Transcription factor MYB62 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9G7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.