Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g057910.2.1 | Tomato | nucleus | 88.55 | 91.64 |
| CDX85422 | Canola | nucleus | 48.15 | 78.14 |
| GSMUA_Achr4P19990_001 | Banana | nucleus | 33.67 | 78.12 |
| CDX86220 | Canola | nucleus | 47.81 | 73.58 |
| GSMUA_Achr5P21090_001 | Banana | nucleus | 44.11 | 71.98 |
| PGSC0003DMT400011745 | Potato | nucleus | 51.85 | 65.81 |
| PGSC0003DMT400011750 | Potato | nucleus | 50.51 | 65.22 |
| PGSC0003DMT400011748 | Potato | nucleus | 60.94 | 61.36 |
| GSMUA_Achr3P12730_001 | Banana | nucleus | 36.03 | 61.14 |
| Bra001202.1-P | Field mustard | nucleus | 60.61 | 59.21 |
| VIT_05s0077g00500.t01 | Wine grape | nucleus | 60.94 | 59.15 |
| CDY34949 | Canola | nucleus | 60.27 | 55.94 |
| Bra040274.1-P | Field mustard | nucleus | 60.27 | 55.94 |
| CDX99864 | Canola | nucleus | 60.27 | 55.94 |
| GSMUA_Achr11P... | Banana | nucleus | 48.48 | 54.96 |
| CDY33891 | Canola | nucleus | 58.59 | 54.72 |
| Bra020624.1-P | Field mustard | nucleus | 58.59 | 54.72 |
| CDY05611 | Canola | nucleus | 58.59 | 54.72 |
| GSMUA_Achr11P... | Banana | nucleus | 48.48 | 54.55 |
| CDY24688 | Canola | nucleus | 58.59 | 54.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.82 | 54.31 |
| GSMUA_Achr8P10800_001 | Banana | nucleus | 46.8 | 54.3 |
| CDY05270 | Canola | nucleus | 58.59 | 54.04 |
| Bra029582.1-P | Field mustard | nucleus | 58.59 | 54.04 |
| PGSC0003DMT400069841 | Potato | nucleus | 58.25 | 53.4 |
| GSMUA_Achr1P24960_001 | Banana | nucleus | 48.48 | 53.33 |
| GSMUA_Achr9P16640_001 | Banana | nucleus | 46.46 | 53.08 |
| CDY70282 | Canola | nucleus | 51.85 | 52.38 |
| KRH02414 | Soybean | nucleus | 56.57 | 52.17 |
| Bra010022.1-P | Field mustard | nucleus | 56.57 | 52.01 |
| Bra010021.1-P | Field mustard | nucleus | 56.57 | 52.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.81 | 50.53 |
| KRH50671 | Soybean | nucleus | 55.22 | 50.46 |
| PGSC0003DMT400001278 | Potato | nucleus | 35.02 | 50.24 |
| GSMUA_Achr8P29910_001 | Banana | nucleus | 45.45 | 50.19 |
| KRH36928 | Soybean | nucleus | 55.56 | 48.53 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.78 | 48.36 |
| TraesCS4A01G172200.1 | Wheat | nucleus | 46.8 | 48.1 |
| KRG97314 | Soybean | nucleus | 54.88 | 47.8 |
| PGSC0003DMT400072687 | Potato | nucleus | 21.89 | 47.79 |
| TraesCSU01G069000.1 | Wheat | nucleus | 46.46 | 47.59 |
| TraesCS4D01G142900.1 | Wheat | nucleus | 46.8 | 47.44 |
| HORVU4Hr1G028780.1 | Barley | nucleus | 46.13 | 46.76 |
| TraesCS5B01G093000.1 | Wheat | nucleus | 43.43 | 46.4 |
| TraesCS5D01G099100.1 | Wheat | nucleus | 43.1 | 46.04 |
| HORVU5Hr1G022690.1 | Barley | nucleus | 43.43 | 45.74 |
| TraesCS5A01G087100.1 | Wheat | nucleus | 42.76 | 45.68 |
| TraesCS4A01G124900.1 | Wheat | nucleus | 48.82 | 45.45 |
| TraesCS4D01G181100.1 | Wheat | nucleus | 48.48 | 45.14 |
| TraesCS3D01G413700.1 | Wheat | nucleus | 44.11 | 44.71 |
| TraesCS4B01G179500.1 | Wheat | nucleus | 47.81 | 44.65 |
| GSMUA_Achr7P05570_001 | Banana | nucleus | 40.74 | 44.49 |
| CDX74100 | Canola | nucleus | 49.49 | 43.62 |
| KXG39500 | Sorghum | nucleus | 49.16 | 43.45 |
| EES00624 | Sorghum | nucleus | 44.44 | 43.14 |
| Zm00001d028930_P001 | Maize | nucleus | 48.48 | 42.86 |
| Zm00001d040594_P001 | Maize | nucleus | 43.1 | 42.24 |
| TraesCS3A01G418100.1 | Wheat | nucleus | 43.77 | 42.21 |
| TraesCS1D01G078600.1 | Wheat | nucleus | 45.79 | 42.11 |
| TraesCS3D01G014800.1 | Wheat | nucleus | 39.39 | 42.09 |
| TraesCS3B01G453300.1 | Wheat | nucleus | 43.43 | 42.02 |
| PGSC0003DMT400037716 | Potato | nucleus | 38.38 | 41.76 |
| TraesCS1B01G094500.1 | Wheat | nucleus | 45.79 | 41.72 |
| TraesCS1A01G076200.1 | Wheat | nucleus | 45.45 | 41.67 |
| HORVU1Hr1G016420.1 | Barley | nucleus | 45.45 | 41.54 |
| GSMUA_Achr11P... | Banana | nucleus | 47.14 | 40.7 |
| PGSC0003DMT400014383 | Potato | nucleus | 37.71 | 40.29 |
| Zm00001d047579_P001 | Maize | nucleus | 47.14 | 40.11 |
| KXG36991 | Sorghum | nucleus | 45.45 | 39.47 |
| GSMUA_Achr3P08370_001 | Banana | nucleus | 38.05 | 39.37 |
| PGSC0003DMT400069955 | Potato | nucleus | 30.3 | 39.3 |
| HORVU4Hr1G052490.5 | Barley | nucleus, plastid | 48.82 | 39.3 |
| Zm00001d009066_P001 | Maize | nucleus | 41.75 | 38.99 |
| HORVU3Hr1G092820.1 | Barley | nucleus | 43.43 | 38.97 |
| Zm00001d048647_P001 | Maize | nucleus | 46.13 | 38.92 |
| Zm00001d007191_P001 | Maize | nucleus | 45.12 | 38.62 |
| EES17207 | Sorghum | nucleus | 43.77 | 38.58 |
| PGSC0003DMT400040149 | Potato | nucleus | 27.95 | 38.07 |
| EES10257 | Sorghum | nucleus | 46.46 | 37.81 |
| Zm00001d030644_P001 | Maize | nucleus | 44.11 | 37.32 |
| TraesCS2A01G097200.1 | Wheat | nucleus | 40.74 | 37.12 |
| TraesCS2D01G096000.1 | Wheat | nucleus | 40.74 | 36.89 |
| TraesCS2B01G112600.1 | Wheat | nucleus | 41.08 | 36.75 |
| Zm00001d024726_P001 | Maize | nucleus | 41.75 | 34.93 |
| PGSC0003DMT400003796 | Potato | nucleus | 29.63 | 34.78 |
| Zm00001d010933_P001 | Maize | nucleus | 42.76 | 34.6 |
| PGSC0003DMT400003479 | Potato | nucleus | 26.94 | 33.61 |
| Os05t0132700-01 | Rice | nucleus | 23.91 | 33.02 |
| KXG21220 | Sorghum | nucleus | 45.12 | 33.0 |
| HORVU2Hr1G016380.1 | Barley | nucleus | 38.72 | 31.68 |
| Zm00001d024725_P001 | Maize | nucleus | 43.1 | 31.53 |
| KXG21221 | Sorghum | nucleus | 43.77 | 27.25 |
| CDY58600 | Canola | nucleus | 21.89 | 20.12 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102591265 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1AGY3 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400008761 | PGSC:PGSC0003DMG400008761 | EnsemblPlants:PGSC0003DMT400022600 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF743 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000295B3B9 | RefSeq:XP_006337993.1 | SEG:seg |
Description
R2R3 transcription factor MYB108 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400008761]
Coordinates
chr1:-:36412167..36413918
Molecular Weight (calculated)
34372.1 Da
IEP (calculated)
7.100
GRAVY (calculated)
-0.824
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHQHVKAGL SRVDANKNED DMDLRRGPWT VEEDFTLMNY IAHHGEGRWN SLARCAGLKR TGKSCRLRWL NYLRPDVRRG NITLEEQLLI LELHSRWGNR
101: WSKIAQHLPG RTDNEIKNYW RTRVQKHAKQ LKCDVNSKQF KDTMRYLWMP RLVERIQAAA AGASTSKVID PQTINPNMVQ IDHNNNNTNS STATASSENS
201: FVSDLTDCCY NYPQQQQDYF QVNQSISSQL IGESLISPTG YFHHALEFQG AAAADMDHQQ NTTQWMDGAN FSDNLWNIED MWFLQQQLNN NNNNNVV
101: WSKIAQHLPG RTDNEIKNYW RTRVQKHAKQ LKCDVNSKQF KDTMRYLWMP RLVERIQAAA AGASTSKVID PQTINPNMVQ IDHNNNNTNS STATASSENS
201: FVSDLTDCCY NYPQQQQDYF QVNQSISSQL IGESLISPTG YFHHALEFQG AAAADMDHQQ NTTQWMDGAN FSDNLWNIED MWFLQQQLNN NNNNNVV
001: MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
101: NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG
201: YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ
301: VHDNGSF
Arabidopsis Description
AtMYB78myb domain protein 78 [Source:TAIR;Acc:AT5G49620]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.